Results 81 - 100 of 112 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 23425 | 0.71 | 0.452364 |
Target: 5'- aGCGAUCGuCGCcGCguUCGUGAGCGg -3' miRNA: 3'- gCGCUAGCuGUGaCGgcAGCGCUUGC- -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 35818 | 0.71 | 0.414071 |
Target: 5'- gGCGcuaCGGCGCccccGaCCGUCGCGAACGu -3' miRNA: 3'- gCGCua-GCUGUGa---C-GGCAGCGCUUGC- -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 20659 | 0.71 | 0.414071 |
Target: 5'- uGCGAUCGACAC-GUCGaUCGCuuACa -3' miRNA: 3'- gCGCUAGCUGUGaCGGC-AGCGcuUGc -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 34333 | 0.71 | 0.432971 |
Target: 5'- uGCGcUCGACGCggcGcCCGUCGuCGAACc -3' miRNA: 3'- gCGCuAGCUGUGa--C-GGCAGC-GCUUGc -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 33340 | 0.71 | 0.442608 |
Target: 5'- -cUGAUCGGCAC-GCCGUggucUGCGAAUGa -3' miRNA: 3'- gcGCUAGCUGUGaCGGCA----GCGCUUGC- -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 23543 | 0.71 | 0.432971 |
Target: 5'- cCGcCGAUCuGCGuaGCUGUCGCGAACGc -3' miRNA: 3'- -GC-GCUAGcUGUgaCGGCAGCGCUUGC- -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 13925 | 0.71 | 0.414071 |
Target: 5'- gGCGAUCGugGCcGCUGcCGCcAGCGu -3' miRNA: 3'- gCGCUAGCugUGaCGGCaGCGcUUGC- -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 462 | 0.72 | 0.386695 |
Target: 5'- gGCGcgCGACG-UGCCGgcgagCGUGAACGc -3' miRNA: 3'- gCGCuaGCUGUgACGGCa----GCGCUUGC- -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 38423 | 0.72 | 0.395688 |
Target: 5'- gGCGAUCGAgACgcuUGCCG-CGuCGAACu -3' miRNA: 3'- gCGCUAGCUgUG---ACGGCaGC-GCUUGc -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 38364 | 0.72 | 0.369119 |
Target: 5'- -cUGAUCGACGC-GCUGUCGCGuguCGg -3' miRNA: 3'- gcGCUAGCUGUGaCGGCAGCGCuu-GC- -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 41449 | 0.72 | 0.395688 |
Target: 5'- aCGCGggCGAguCgGCCGUCGUGAuccaugGCGa -3' miRNA: 3'- -GCGCuaGCUguGaCGGCAGCGCU------UGC- -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 18424 | 0.72 | 0.360539 |
Target: 5'- uCGCGAUCGGCGgcGUCGacacCGCGAGCGc -3' miRNA: 3'- -GCGCUAGCUGUgaCGGCa---GCGCUUGC- -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 46152 | 0.73 | 0.327627 |
Target: 5'- aCGUGAUCGAUGCgGCCGUgaCGuCGGGCa -3' miRNA: 3'- -GCGCUAGCUGUGaCGGCA--GC-GCUUGc -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 35782 | 0.73 | 0.319754 |
Target: 5'- gGCGG-CGACACUggcgcGCCGggcggggCGCGGGCGg -3' miRNA: 3'- gCGCUaGCUGUGA-----CGGCa------GCGCUUGC- -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 15634 | 0.73 | 0.319754 |
Target: 5'- aGUGAUCGACGCgagcgcGCCG-CGCGA-CGu -3' miRNA: 3'- gCGCUAGCUGUGa-----CGGCaGCGCUuGC- -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 47471 | 0.73 | 0.3438 |
Target: 5'- aCGCGccggCGGCgACUGCCG-CGCuGAACGa -3' miRNA: 3'- -GCGCua--GCUG-UGACGGCaGCG-CUUGC- -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 2490 | 0.73 | 0.312024 |
Target: 5'- aGaCGAUCGACGCUGCC-UCGagauCGGGCGc -3' miRNA: 3'- gC-GCUAGCUGUGACGGcAGC----GCUUGC- -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 39686 | 0.73 | 0.327627 |
Target: 5'- aCGCGGacgUUGugGCUggcucGCCGUCGCGAgguACGa -3' miRNA: 3'- -GCGCU---AGCugUGA-----CGGCAGCGCU---UGC- -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 698 | 0.74 | 0.282528 |
Target: 5'- gCGCGAUCG-UGCcGCCGccCGCGAGCGc -3' miRNA: 3'- -GCGCUAGCuGUGaCGGCa-GCGCUUGC- -5' |
|||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 25201 | 0.75 | 0.236296 |
Target: 5'- gGCGAccgguaccgCGACGCUGCCGgcgGCGAACa -3' miRNA: 3'- gCGCUa--------GCUGUGACGGCag-CGCUUGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home