miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 45261 0.7 0.502804
Target:  5'- aGCGcgCGugGC-GCCuuggcUCGCGAACGa -3'
miRNA:   3'- gCGCuaGCugUGaCGGc----AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 32664 0.69 0.513191
Target:  5'- uCGCGcUUGACGCgccGCCGgugaccgcCGCGAGCa -3'
miRNA:   3'- -GCGCuAGCUGUGa--CGGCa-------GCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 22449 0.69 0.513191
Target:  5'- aCGCGAUggCGAC-CUGCCcgaggcUCGUGAACa -3'
miRNA:   3'- -GCGCUA--GCUGuGACGGc-----AGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 42758 0.69 0.527876
Target:  5'- uGcCGA-CGACGCUGCCGcgauggcagaagaaCGCGAACa -3'
miRNA:   3'- gC-GCUaGCUGUGACGGCa-------------GCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 37068 0.69 0.534218
Target:  5'- gGCGAuuUCGugcCGCUGuUCGUCGCGcACGa -3'
miRNA:   3'- gCGCU--AGCu--GUGAC-GGCAGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 18084 0.69 0.534218
Target:  5'- uCGCGcAUCGACGCguuCCGUCgGCGcuACGg -3'
miRNA:   3'- -GCGC-UAGCUGUGac-GGCAG-CGCu-UGC- -5'
17017 5' -55.2 NC_004333.2 + 41385 0.69 0.534218
Target:  5'- gGCGAagaUCGGCGC-GCUGUCGUauGCGa -3'
miRNA:   3'- gCGCU---AGCUGUGaCGGCAGCGcuUGC- -5'
17017 5' -55.2 NC_004333.2 + 25163 0.69 0.543781
Target:  5'- -cCGAUCGACACgcucgccUGCCGcCGCGucuCGa -3'
miRNA:   3'- gcGCUAGCUGUG-------ACGGCaGCGCuu-GC- -5'
17017 5' -55.2 NC_004333.2 + 17168 0.69 0.544847
Target:  5'- gCGCG-UCGACAagGCCGcUGCGAGCc -3'
miRNA:   3'- -GCGCuAGCUGUgaCGGCaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 22879 0.69 0.544847
Target:  5'- gCGCGAUCG-UACUGgCGcUCGUGA-CGa -3'
miRNA:   3'- -GCGCUAGCuGUGACgGC-AGCGCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 28665 0.69 0.544847
Target:  5'- uCGCGGUCGcagaauuccgguGCguGCUGCUGccagaUCGCGAGCa -3'
miRNA:   3'- -GCGCUAGC------------UG--UGACGGC-----AGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 9291 0.69 0.544847
Target:  5'- gCGCGAagCGGCGCgGgUG-CGCGGACGg -3'
miRNA:   3'- -GCGCUa-GCUGUGaCgGCaGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 26629 0.69 0.555543
Target:  5'- gCGuUGAUCGuugucGCACcGCCGcUCGUGAGCGu -3'
miRNA:   3'- -GC-GCUAGC-----UGUGaCGGC-AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 20734 0.69 0.5663
Target:  5'- gGCGcgCG-CGCUGCCGgacaUCGCcGACGc -3'
miRNA:   3'- gCGCuaGCuGUGACGGC----AGCGcUUGC- -5'
17017 5' -55.2 NC_004333.2 + 16068 0.69 0.5663
Target:  5'- uCGCG-UCGGaACUGCCGUCacUGAACGc -3'
miRNA:   3'- -GCGCuAGCUgUGACGGCAGc-GCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 26343 0.68 0.577109
Target:  5'- uCGCGGuauUCGAUgggAUUGCCGUCGaggaaugccuCGAACGc -3'
miRNA:   3'- -GCGCU---AGCUG---UGACGGCAGC----------GCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 37800 0.68 0.587963
Target:  5'- uGCGAagCGGCGCgaugcgaaGCgCGUCGCGAuCGa -3'
miRNA:   3'- gCGCUa-GCUGUGa-------CG-GCAGCGCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 9047 0.68 0.587963
Target:  5'- gGCGAccugCGACACgucgacGCCGaucugCGUGAGCGc -3'
miRNA:   3'- gCGCUa---GCUGUGa-----CGGCa----GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 33801 0.68 0.587963
Target:  5'- -aCGAUCGAUGCUGCgGaCGCGAu-- -3'
miRNA:   3'- gcGCUAGCUGUGACGgCaGCGCUugc -5'
17017 5' -55.2 NC_004333.2 + 45029 0.68 0.587963
Target:  5'- cCGCGcgUGGCGCUGgCGgCGCGcaAACGc -3'
miRNA:   3'- -GCGCuaGCUGUGACgGCaGCGC--UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.