miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 37437 0.68 0.598854
Target:  5'- gCGCGGUaCGAUACgccGCCaGUCGgGAaaACGa -3'
miRNA:   3'- -GCGCUA-GCUGUGa--CGG-CAGCgCU--UGC- -5'
17017 5' -55.2 NC_004333.2 + 41571 0.68 0.598854
Target:  5'- uGCGAcugCGGCGCUgggcggcgcGCCGUgGCGGcgauGCGg -3'
miRNA:   3'- gCGCUa--GCUGUGA---------CGGCAgCGCU----UGC- -5'
17017 5' -55.2 NC_004333.2 + 25220 0.68 0.598854
Target:  5'- aCGCccgCGACGCUGCCGUuCGgGuuCGa -3'
miRNA:   3'- -GCGcuaGCUGUGACGGCA-GCgCuuGC- -5'
17017 5' -55.2 NC_004333.2 + 28285 0.68 0.609773
Target:  5'- gCGCGGaUGGCccagaGCUGCUGagCGCGGGCGu -3'
miRNA:   3'- -GCGCUaGCUG-----UGACGGCa-GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 27521 0.68 0.609773
Target:  5'- aGCGAUCGACgugucgaucgcaAgUGCCG-CGCcgGGGCGa -3'
miRNA:   3'- gCGCUAGCUG------------UgACGGCaGCG--CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 14096 0.68 0.609773
Target:  5'- gCGCGAUCGuCA-UGCCGUCGaCGcuauCGu -3'
miRNA:   3'- -GCGCUAGCuGUgACGGCAGC-GCuu--GC- -5'
17017 5' -55.2 NC_004333.2 + 7485 0.68 0.620712
Target:  5'- gGCGAUCGGguUgguguucuuUGCgGUCGCGAguGCGc -3'
miRNA:   3'- gCGCUAGCUguG---------ACGgCAGCGCU--UGC- -5'
17017 5' -55.2 NC_004333.2 + 43322 0.68 0.620712
Target:  5'- aGCGGcaUCGGCACgGCgCG-CGCGuACGg -3'
miRNA:   3'- gCGCU--AGCUGUGaCG-GCaGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 39487 0.68 0.620712
Target:  5'- -aCGGUCGGCACguucGCCGU-GCuGAACGc -3'
miRNA:   3'- gcGCUAGCUGUGa---CGGCAgCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 12051 0.68 0.620712
Target:  5'- gCGcCGGUCG-CGCagGCCGUCGCcAACc -3'
miRNA:   3'- -GC-GCUAGCuGUGa-CGGCAGCGcUUGc -5'
17017 5' -55.2 NC_004333.2 + 30827 0.68 0.620712
Target:  5'- aGaCGGUCGACACcG-CGUCGUaGAACGc -3'
miRNA:   3'- gC-GCUAGCUGUGaCgGCAGCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 2923 0.68 0.62509
Target:  5'- aGCGGUCGugACcgucaacgUGCCGcuguagcccugcagcUgCGCGAGCGu -3'
miRNA:   3'- gCGCUAGCugUG--------ACGGC---------------A-GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 33945 0.67 0.631659
Target:  5'- gCGCGcgCG-CAC-GCCGUCGC-AugGg -3'
miRNA:   3'- -GCGCuaGCuGUGaCGGCAGCGcUugC- -5'
17017 5' -55.2 NC_004333.2 + 20790 0.67 0.631659
Target:  5'- -aUGA-CGGCACgGCCGUCGCGccgGGCa -3'
miRNA:   3'- gcGCUaGCUGUGaCGGCAGCGC---UUGc -5'
17017 5' -55.2 NC_004333.2 + 19422 0.67 0.631659
Target:  5'- gCGCGGUCGACGCgGCgcUCGCGcaguuGCu -3'
miRNA:   3'- -GCGCUAGCUGUGaCGgcAGCGCu----UGc -5'
17017 5' -55.2 NC_004333.2 + 8651 0.67 0.641514
Target:  5'- gCGCGGcgcccggcuugcUCGugACggUGCCGUCggcguucagcacgGCGAACGu -3'
miRNA:   3'- -GCGCU------------AGCugUG--ACGGCAG-------------CGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 41530 0.67 0.642608
Target:  5'- gCGCGccgagCG-CGCUGCCGagCGCGAuCGa -3'
miRNA:   3'- -GCGCua---GCuGUGACGGCa-GCGCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 11134 0.67 0.642608
Target:  5'- gCGCGAUCG-CGCUGCUGUC-Ca---- -3'
miRNA:   3'- -GCGCUAGCuGUGACGGCAGcGcuugc -5'
17017 5' -55.2 NC_004333.2 + 10180 0.67 0.642608
Target:  5'- aGCcGUCGACAagaUGCaGUCGCGcACGc -3'
miRNA:   3'- gCGcUAGCUGUg--ACGgCAGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 11973 0.67 0.653547
Target:  5'- aCGCGcGUCGACGaucgcgGCCGuaUCGCGGugcaACGg -3'
miRNA:   3'- -GCGC-UAGCUGUga----CGGC--AGCGCU----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.