miRNA display CGI


Results 81 - 100 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 9607 0.67 0.663376
Target:  5'- gCGCGGcaUCGGCcgguugcgcaccgGCUGCCGgcggCGCGccuGCGc -3'
miRNA:   3'- -GCGCU--AGCUG-------------UGACGGCa---GCGCu--UGC- -5'
17017 5' -55.2 NC_004333.2 + 27217 0.67 0.664467
Target:  5'- gCGCGGU--ACAUcGCCGUCGUGAucGCa -3'
miRNA:   3'- -GCGCUAgcUGUGaCGGCAGCGCU--UGc -5'
17017 5' -55.2 NC_004333.2 + 29999 0.67 0.664467
Target:  5'- gCGCGAgcaccaugCGGCGCcGCuCGUCGgGAuCGg -3'
miRNA:   3'- -GCGCUa-------GCUGUGaCG-GCAGCgCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 3840 0.67 0.664467
Target:  5'- gGCaGAUCGugAUagccguguUGCCGcCGCaGAACGa -3'
miRNA:   3'- gCG-CUAGCugUG--------ACGGCaGCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 1666 0.67 0.664467
Target:  5'- gCGCGGUCGgaaacaGCGCUuCCGUCGUGcaguACa -3'
miRNA:   3'- -GCGCUAGC------UGUGAcGGCAGCGCu---UGc -5'
17017 5' -55.2 NC_004333.2 + 30770 0.67 0.664467
Target:  5'- aGCGcGUCGugACcgcGCUG-CGCGAGCa -3'
miRNA:   3'- gCGC-UAGCugUGa--CGGCaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 30272 0.67 0.674269
Target:  5'- gGCGAuugucgucgaguuUCGACggcgagcugGCcGCCGUCGCGccuGCGa -3'
miRNA:   3'- gCGCU-------------AGCUG---------UGaCGGCAGCGCu--UGC- -5'
17017 5' -55.2 NC_004333.2 + 11635 0.67 0.675356
Target:  5'- gCGCGAacgugUCGaaguaGCGCUGCCaguaGUCGCGcaGGCGc -3'
miRNA:   3'- -GCGCU-----AGC-----UGUGACGG----CAGCGC--UUGC- -5'
17017 5' -55.2 NC_004333.2 + 32973 0.67 0.686205
Target:  5'- uGCGAcuUCGGCAUagUGCUGgaaCGCGAguccgGCGa -3'
miRNA:   3'- gCGCU--AGCUGUG--ACGGCa--GCGCU-----UGC- -5'
17017 5' -55.2 NC_004333.2 + 21005 0.67 0.686205
Target:  5'- aGCGcgUGGCA--GCCGUCaCGGGCGa -3'
miRNA:   3'- gCGCuaGCUGUgaCGGCAGcGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 2447 0.67 0.686205
Target:  5'- uCGCGAUCGGCACguucgcGCCGggCuCGAGa- -3'
miRNA:   3'- -GCGCUAGCUGUGa-----CGGCa-GcGCUUgc -5'
17017 5' -55.2 NC_004333.2 + 34401 0.67 0.686205
Target:  5'- aCGUGAgcaaCuACAC-GCCG-CGCGAGCGg -3'
miRNA:   3'- -GCGCUa---GcUGUGaCGGCaGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 40501 0.66 0.695926
Target:  5'- cCGUGGUCGGguucgccggcaguCGaaGCgGUCGUGAACGa -3'
miRNA:   3'- -GCGCUAGCU-------------GUgaCGgCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 6019 0.66 0.697003
Target:  5'- uGCGAg-GACGCUGuuGcccucgggCGUGAGCGu -3'
miRNA:   3'- gCGCUagCUGUGACggCa-------GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 10128 0.66 0.697003
Target:  5'- gGCccaGGUCGGCAUaGCCGaccacuUCGCGAccGCGa -3'
miRNA:   3'- gCG---CUAGCUGUGaCGGC------AGCGCU--UGC- -5'
17017 5' -55.2 NC_004333.2 + 8942 0.66 0.697003
Target:  5'- uCGCGc-CGGCGCUGuCCaUCGCGuGCGc -3'
miRNA:   3'- -GCGCuaGCUGUGAC-GGcAGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 5431 0.66 0.697003
Target:  5'- aGCGucGUCGGCAuCUGCgaaCGCGAACa -3'
miRNA:   3'- gCGC--UAGCUGU-GACGgcaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 5508 0.66 0.707739
Target:  5'- aGaCGAUCGGCGCUGU---UGCGGGCu -3'
miRNA:   3'- gC-GCUAGCUGUGACGgcaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 8947 0.66 0.707739
Target:  5'- uGCGGUCGagcauuGCACgcagcucgGCCGaCGgGAGCGc -3'
miRNA:   3'- gCGCUAGC------UGUGa-------CGGCaGCgCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 16838 0.66 0.707739
Target:  5'- aGCGGUCuGAUgaaGCUgGCCGgcaUUGCGGGCGc -3'
miRNA:   3'- gCGCUAG-CUG---UGA-CGGC---AGCGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.