Results 101 - 112 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 38554 | 0.66 | 0.707739 |
Target: 5'- aCGCGcucaCGGCaacgacacaGCUGCUGuUCGCGGGCa -3' miRNA: 3'- -GCGCua--GCUG---------UGACGGC-AGCGCUUGc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 10812 | 0.66 | 0.707739 |
Target: 5'- cCGCG--CGACGCggUGCaCGUCGCGuAGCc -3' miRNA: 3'- -GCGCuaGCUGUG--ACG-GCAGCGC-UUGc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 16838 | 0.66 | 0.707739 |
Target: 5'- aGCGGUCuGAUgaaGCUgGCCGgcaUUGCGGGCGc -3' miRNA: 3'- gCGCUAG-CUG---UGA-CGGC---AGCGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 19758 | 0.66 | 0.718401 |
Target: 5'- gCGCGAcacCGGCGCgacaCGUUGCGAuuGCGg -3' miRNA: 3'- -GCGCUa--GCUGUGacg-GCAGCGCU--UGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 36337 | 0.66 | 0.726871 |
Target: 5'- aGCGAUguacCGGCGCaagcuggagcgcGCCGUCGCGcuGAUGg -3' miRNA: 3'- gCGCUA----GCUGUGa-----------CGGCAGCGC--UUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 6545 | 0.66 | 0.726871 |
Target: 5'- cCGCGccCGACAauCUGCCGccagagcacgaGCGAGCGc -3' miRNA: 3'- -GCGCuaGCUGU--GACGGCag---------CGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 33005 | 0.66 | 0.728979 |
Target: 5'- aCGCGAccuaCG-CACUGCCGcUCGCucGCc -3' miRNA: 3'- -GCGCUa---GCuGUGACGGC-AGCGcuUGc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 20748 | 0.66 | 0.728979 |
Target: 5'- gCGCcuGGUCGACA--GCCGUCGCc-GCGc -3' miRNA: 3'- -GCG--CUAGCUGUgaCGGCAGCGcuUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 18780 | 0.66 | 0.728979 |
Target: 5'- gGCGAaCGGCGuuacGCCGuuugcuUCGCGGGCGa -3' miRNA: 3'- gCGCUaGCUGUga--CGGC------AGCGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 27663 | 0.66 | 0.739461 |
Target: 5'- aGCGAgCGGCGCggcggcgGCCGgcaGCGGuugcGCGg -3' miRNA: 3'- gCGCUaGCUGUGa------CGGCag-CGCU----UGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 29332 | 0.66 | 0.739461 |
Target: 5'- uGCGcaCGGCaacugcguACUGCCG-CGCGGGCu -3' miRNA: 3'- gCGCuaGCUG--------UGACGGCaGCGCUUGc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 5335 | 0.66 | 0.739461 |
Target: 5'- gCGCugGAUCGuCAC-GCCGcCGUGGAUGc -3' miRNA: 3'- -GCG--CUAGCuGUGaCGGCaGCGCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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