miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 18424 0.72 0.360539
Target:  5'- uCGCGAUCGGCGgcGUCGacacCGCGAGCGc -3'
miRNA:   3'- -GCGCUAGCUGUgaCGGCa---GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 18780 0.66 0.728979
Target:  5'- gGCGAaCGGCGuuacGCCGuuugcuUCGCGGGCGa -3'
miRNA:   3'- gCGCUaGCUGUga--CGGC------AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 19422 0.67 0.631659
Target:  5'- gCGCGGUCGACGCgGCgcUCGCGcaguuGCu -3'
miRNA:   3'- -GCGCUAGCUGUGaCGgcAGCGCu----UGc -5'
17017 5' -55.2 NC_004333.2 + 19490 0.77 0.176594
Target:  5'- uGCGAUCGGCGCUGgCG-CGCuGGCGg -3'
miRNA:   3'- gCGCUAGCUGUGACgGCaGCGcUUGC- -5'
17017 5' -55.2 NC_004333.2 + 19758 0.66 0.718401
Target:  5'- gCGCGAcacCGGCGCgacaCGUUGCGAuuGCGg -3'
miRNA:   3'- -GCGCUa--GCUGUGacg-GCAGCGCU--UGC- -5'
17017 5' -55.2 NC_004333.2 + 20659 0.71 0.414071
Target:  5'- uGCGAUCGACAC-GUCGaUCGCuuACa -3'
miRNA:   3'- gCGCUAGCUGUGaCGGC-AGCGcuUGc -5'
17017 5' -55.2 NC_004333.2 + 20734 0.69 0.5663
Target:  5'- gGCGcgCG-CGCUGCCGgacaUCGCcGACGc -3'
miRNA:   3'- gCGCuaGCuGUGACGGC----AGCGcUUGC- -5'
17017 5' -55.2 NC_004333.2 + 20748 0.66 0.728979
Target:  5'- gCGCcuGGUCGACA--GCCGUCGCc-GCGc -3'
miRNA:   3'- -GCG--CUAGCUGUgaCGGCAGCGcuUGC- -5'
17017 5' -55.2 NC_004333.2 + 20790 0.67 0.631659
Target:  5'- -aUGA-CGGCACgGCCGUCGCGccgGGCa -3'
miRNA:   3'- gcGCUaGCUGUGaCGGCAGCGC---UUGc -5'
17017 5' -55.2 NC_004333.2 + 21005 0.67 0.686205
Target:  5'- aGCGcgUGGCA--GCCGUCaCGGGCGa -3'
miRNA:   3'- gCGCuaGCUGUgaCGGCAGcGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 22449 0.69 0.513191
Target:  5'- aCGCGAUggCGAC-CUGCCcgaggcUCGUGAACa -3'
miRNA:   3'- -GCGCUA--GCUGuGACGGc-----AGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 22811 0.7 0.462237
Target:  5'- gGUGuUCGucGCGCUGUCGcUCGUGAACGu -3'
miRNA:   3'- gCGCuAGC--UGUGACGGC-AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 22879 0.69 0.544847
Target:  5'- gCGCGAUCG-UACUGgCGcUCGUGA-CGa -3'
miRNA:   3'- -GCGCUAGCuGUGACgGC-AGCGCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 23425 0.71 0.452364
Target:  5'- aGCGAUCGuCGCcGCguUCGUGAGCGg -3'
miRNA:   3'- gCGCUAGCuGUGaCGgcAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 23543 0.71 0.432971
Target:  5'- cCGcCGAUCuGCGuaGCUGUCGCGAACGc -3'
miRNA:   3'- -GC-GCUAGcUGUgaCGGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 25163 0.69 0.543781
Target:  5'- -cCGAUCGACACgcucgccUGCCGcCGCGucuCGa -3'
miRNA:   3'- gcGCUAGCUGUG-------ACGGCaGCGCuu-GC- -5'
17017 5' -55.2 NC_004333.2 + 25201 0.75 0.236296
Target:  5'- gGCGAccgguaccgCGACGCUGCCGgcgGCGAACa -3'
miRNA:   3'- gCGCUa--------GCUGUGACGGCag-CGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 25220 0.68 0.598854
Target:  5'- aCGCccgCGACGCUGCCGUuCGgGuuCGa -3'
miRNA:   3'- -GCGcuaGCUGUGACGGCA-GCgCuuGC- -5'
17017 5' -55.2 NC_004333.2 + 25650 0.82 0.085719
Target:  5'- gCGCGGUCGAaagcgucuUGCcgGCCGUCGCGAACGc -3'
miRNA:   3'- -GCGCUAGCU--------GUGa-CGGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 26343 0.68 0.577109
Target:  5'- uCGCGGuauUCGAUgggAUUGCCGUCGaggaaugccuCGAACGc -3'
miRNA:   3'- -GCGCU---AGCUG---UGACGGCAGC----------GCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.