miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 26629 0.69 0.555543
Target:  5'- gCGuUGAUCGuugucGCACcGCCGcUCGUGAGCGu -3'
miRNA:   3'- -GC-GCUAGC-----UGUGaCGGC-AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 27217 0.67 0.664467
Target:  5'- gCGCGGU--ACAUcGCCGUCGUGAucGCa -3'
miRNA:   3'- -GCGCUAgcUGUGaCGGCAGCGCU--UGc -5'
17017 5' -55.2 NC_004333.2 + 27521 0.68 0.609773
Target:  5'- aGCGAUCGACgugucgaucgcaAgUGCCG-CGCcgGGGCGa -3'
miRNA:   3'- gCGCUAGCUG------------UgACGGCaGCG--CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 27663 0.66 0.739461
Target:  5'- aGCGAgCGGCGCggcggcgGCCGgcaGCGGuugcGCGg -3'
miRNA:   3'- gCGCUaGCUGUGa------CGGCag-CGCU----UGC- -5'
17017 5' -55.2 NC_004333.2 + 27954 0.7 0.462237
Target:  5'- uCGCGGUCGAuCGCcGCCacgaaagCGCGAGCc -3'
miRNA:   3'- -GCGCUAGCU-GUGaCGGca-----GCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 28285 0.68 0.609773
Target:  5'- gCGCGGaUGGCccagaGCUGCUGagCGCGGGCGu -3'
miRNA:   3'- -GCGCUaGCUG-----UGACGGCa-GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 28665 0.69 0.544847
Target:  5'- uCGCGGUCGcagaauuccgguGCguGCUGCUGccagaUCGCGAGCa -3'
miRNA:   3'- -GCGCUAGC------------UG--UGACGGC-----AGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 28896 0.7 0.496616
Target:  5'- uCGCGcUCGGCGCaggccggcgcauacuUGCCGUCggugcguaGCGGGCGc -3'
miRNA:   3'- -GCGCuAGCUGUG---------------ACGGCAG--------CGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 29332 0.66 0.739461
Target:  5'- uGCGcaCGGCaacugcguACUGCCG-CGCGGGCu -3'
miRNA:   3'- gCGCuaGCUG--------UGACGGCaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 29751 0.77 0.186349
Target:  5'- uCGCGGugUCGACGCcGCCGaUCGCGAGgCGu -3'
miRNA:   3'- -GCGCU--AGCUGUGaCGGC-AGCGCUU-GC- -5'
17017 5' -55.2 NC_004333.2 + 29999 0.67 0.664467
Target:  5'- gCGCGAgcaccaugCGGCGCcGCuCGUCGgGAuCGg -3'
miRNA:   3'- -GCGCUa-------GCUGUGaCG-GCAGCgCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 30229 0.7 0.482314
Target:  5'- -uCGAUCGACGC-GCCGcgCGCGAucaguGCGu -3'
miRNA:   3'- gcGCUAGCUGUGaCGGCa-GCGCU-----UGC- -5'
17017 5' -55.2 NC_004333.2 + 30272 0.67 0.674269
Target:  5'- gGCGAuugucgucgaguuUCGACggcgagcugGCcGCCGUCGCGccuGCGa -3'
miRNA:   3'- gCGCU-------------AGCUG---------UGaCGGCAGCGCu--UGC- -5'
17017 5' -55.2 NC_004333.2 + 30770 0.67 0.664467
Target:  5'- aGCGcGUCGugACcgcGCUG-CGCGAGCa -3'
miRNA:   3'- gCGC-UAGCugUGa--CGGCaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 30827 0.68 0.620712
Target:  5'- aGaCGGUCGACACcG-CGUCGUaGAACGc -3'
miRNA:   3'- gC-GCUAGCUGUGaCgGCAGCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 32664 0.69 0.513191
Target:  5'- uCGCGcUUGACGCgccGCCGgugaccgcCGCGAGCa -3'
miRNA:   3'- -GCGCuAGCUGUGa--CGGCa-------GCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 32973 0.67 0.686205
Target:  5'- uGCGAcuUCGGCAUagUGCUGgaaCGCGAguccgGCGa -3'
miRNA:   3'- gCGCU--AGCUGUG--ACGGCa--GCGCU-----UGC- -5'
17017 5' -55.2 NC_004333.2 + 33005 0.66 0.728979
Target:  5'- aCGCGAccuaCG-CACUGCCGcUCGCucGCc -3'
miRNA:   3'- -GCGCUa---GCuGUGACGGC-AGCGcuUGc -5'
17017 5' -55.2 NC_004333.2 + 33340 0.71 0.442608
Target:  5'- -cUGAUCGGCAC-GCCGUggucUGCGAAUGa -3'
miRNA:   3'- gcGCUAGCUGUGaCGGCA----GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 33349 0.76 0.212834
Target:  5'- gCGCGAgaaCGGCGC-GCCGUCGUgGAACGc -3'
miRNA:   3'- -GCGCUa--GCUGUGaCGGCAGCG-CUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.