miRNA display CGI


Results 81 - 100 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 33801 0.68 0.587963
Target:  5'- -aCGAUCGAUGCUGCgGaCGCGAu-- -3'
miRNA:   3'- gcGCUAGCUGUGACGgCaGCGCUugc -5'
17017 5' -55.2 NC_004333.2 + 33945 0.67 0.631659
Target:  5'- gCGCGcgCG-CAC-GCCGUCGC-AugGg -3'
miRNA:   3'- -GCGCuaGCuGUGaCGGCAGCGcUugC- -5'
17017 5' -55.2 NC_004333.2 + 34333 0.71 0.432971
Target:  5'- uGCGcUCGACGCggcGcCCGUCGuCGAACc -3'
miRNA:   3'- gCGCuAGCUGUGa--C-GGCAGC-GCUUGc -5'
17017 5' -55.2 NC_004333.2 + 34401 0.67 0.686205
Target:  5'- aCGUGAgcaaCuACAC-GCCG-CGCGAGCGg -3'
miRNA:   3'- -GCGCUa---GcUGUGaCGGCaGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 35782 0.73 0.319754
Target:  5'- gGCGG-CGACACUggcgcGCCGggcggggCGCGGGCGg -3'
miRNA:   3'- gCGCUaGCUGUGA-----CGGCa------GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 35818 0.71 0.414071
Target:  5'- gGCGcuaCGGCGCccccGaCCGUCGCGAACGu -3'
miRNA:   3'- gCGCua-GCUGUGa---C-GGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 36337 0.66 0.726871
Target:  5'- aGCGAUguacCGGCGCaagcuggagcgcGCCGUCGCGcuGAUGg -3'
miRNA:   3'- gCGCUA----GCUGUGa-----------CGGCAGCGC--UUGC- -5'
17017 5' -55.2 NC_004333.2 + 37068 0.69 0.534218
Target:  5'- gGCGAuuUCGugcCGCUGuUCGUCGCGcACGa -3'
miRNA:   3'- gCGCU--AGCu--GUGAC-GGCAGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 37437 0.68 0.598854
Target:  5'- gCGCGGUaCGAUACgccGCCaGUCGgGAaaACGa -3'
miRNA:   3'- -GCGCUA-GCUGUGa--CGG-CAGCgCU--UGC- -5'
17017 5' -55.2 NC_004333.2 + 37800 0.68 0.587963
Target:  5'- uGCGAagCGGCGCgaugcgaaGCgCGUCGCGAuCGa -3'
miRNA:   3'- gCGCUa-GCUGUGa-------CG-GCAGCGCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 38364 0.72 0.369119
Target:  5'- -cUGAUCGACGC-GCUGUCGCGuguCGg -3'
miRNA:   3'- gcGCUAGCUGUGaCGGCAGCGCuu-GC- -5'
17017 5' -55.2 NC_004333.2 + 38423 0.72 0.395688
Target:  5'- gGCGAUCGAgACgcuUGCCG-CGuCGAACu -3'
miRNA:   3'- gCGCUAGCUgUG---ACGGCaGC-GCUUGc -5'
17017 5' -55.2 NC_004333.2 + 38554 0.66 0.707739
Target:  5'- aCGCGcucaCGGCaacgacacaGCUGCUGuUCGCGGGCa -3'
miRNA:   3'- -GCGCua--GCUG---------UGACGGC-AGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 38987 1.1 0.000971
Target:  5'- cCGCGAUCGACACUGCCGUCGCGAACGa -3'
miRNA:   3'- -GCGCUAGCUGUGACGGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 39236 0.79 0.141985
Target:  5'- aCGCGAUgGACAgcGCCGgCGCGAACGa -3'
miRNA:   3'- -GCGCUAgCUGUgaCGGCaGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 39487 0.68 0.620712
Target:  5'- -aCGGUCGGCACguucGCCGU-GCuGAACGc -3'
miRNA:   3'- gcGCUAGCUGUGa---CGGCAgCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 39636 0.75 0.255285
Target:  5'- aGCGGcCGACuGCUGCCGgaCGCGAACu -3'
miRNA:   3'- gCGCUaGCUG-UGACGGCa-GCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 39686 0.73 0.327627
Target:  5'- aCGCGGacgUUGugGCUggcucGCCGUCGCGAgguACGa -3'
miRNA:   3'- -GCGCU---AGCugUGA-----CGGCAGCGCU---UGC- -5'
17017 5' -55.2 NC_004333.2 + 40501 0.66 0.695926
Target:  5'- cCGUGGUCGGguucgccggcaguCGaaGCgGUCGUGAACGa -3'
miRNA:   3'- -GCGCUAGCU-------------GUgaCGgCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 41385 0.69 0.534218
Target:  5'- gGCGAagaUCGGCGC-GCUGUCGUauGCGa -3'
miRNA:   3'- gCGCU---AGCUGUGaCGGCAGCGcuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.