miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 38423 0.72 0.395688
Target:  5'- gGCGAUCGAgACgcuUGCCG-CGuCGAACu -3'
miRNA:   3'- gCGCUAGCUgUG---ACGGCaGC-GCUUGc -5'
17017 5' -55.2 NC_004333.2 + 38364 0.72 0.369119
Target:  5'- -cUGAUCGACGC-GCUGUCGCGuguCGg -3'
miRNA:   3'- gcGCUAGCUGUGaCGGCAGCGCuu-GC- -5'
17017 5' -55.2 NC_004333.2 + 37800 0.68 0.587963
Target:  5'- uGCGAagCGGCGCgaugcgaaGCgCGUCGCGAuCGa -3'
miRNA:   3'- gCGCUa-GCUGUGa-------CG-GCAGCGCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 37437 0.68 0.598854
Target:  5'- gCGCGGUaCGAUACgccGCCaGUCGgGAaaACGa -3'
miRNA:   3'- -GCGCUA-GCUGUGa--CGG-CAGCgCU--UGC- -5'
17017 5' -55.2 NC_004333.2 + 37068 0.69 0.534218
Target:  5'- gGCGAuuUCGugcCGCUGuUCGUCGCGcACGa -3'
miRNA:   3'- gCGCU--AGCu--GUGAC-GGCAGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 36337 0.66 0.726871
Target:  5'- aGCGAUguacCGGCGCaagcuggagcgcGCCGUCGCGcuGAUGg -3'
miRNA:   3'- gCGCUA----GCUGUGa-----------CGGCAGCGC--UUGC- -5'
17017 5' -55.2 NC_004333.2 + 35818 0.71 0.414071
Target:  5'- gGCGcuaCGGCGCccccGaCCGUCGCGAACGu -3'
miRNA:   3'- gCGCua-GCUGUGa---C-GGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 35782 0.73 0.319754
Target:  5'- gGCGG-CGACACUggcgcGCCGggcggggCGCGGGCGg -3'
miRNA:   3'- gCGCUaGCUGUGA-----CGGCa------GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 34401 0.67 0.686205
Target:  5'- aCGUGAgcaaCuACAC-GCCG-CGCGAGCGg -3'
miRNA:   3'- -GCGCUa---GcUGUGaCGGCaGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 34333 0.71 0.432971
Target:  5'- uGCGcUCGACGCggcGcCCGUCGuCGAACc -3'
miRNA:   3'- gCGCuAGCUGUGa--C-GGCAGC-GCUUGc -5'
17017 5' -55.2 NC_004333.2 + 33945 0.67 0.631659
Target:  5'- gCGCGcgCG-CAC-GCCGUCGC-AugGg -3'
miRNA:   3'- -GCGCuaGCuGUGaCGGCAGCGcUugC- -5'
17017 5' -55.2 NC_004333.2 + 33801 0.68 0.587963
Target:  5'- -aCGAUCGAUGCUGCgGaCGCGAu-- -3'
miRNA:   3'- gcGCUAGCUGUGACGgCaGCGCUugc -5'
17017 5' -55.2 NC_004333.2 + 33349 0.76 0.212834
Target:  5'- gCGCGAgaaCGGCGC-GCCGUCGUgGAACGc -3'
miRNA:   3'- -GCGCUa--GCUGUGaCGGCAGCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 33340 0.71 0.442608
Target:  5'- -cUGAUCGGCAC-GCCGUggucUGCGAAUGa -3'
miRNA:   3'- gcGCUAGCUGUGaCGGCA----GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 33005 0.66 0.728979
Target:  5'- aCGCGAccuaCG-CACUGCCGcUCGCucGCc -3'
miRNA:   3'- -GCGCUa---GCuGUGACGGC-AGCGcuUGc -5'
17017 5' -55.2 NC_004333.2 + 32973 0.67 0.686205
Target:  5'- uGCGAcuUCGGCAUagUGCUGgaaCGCGAguccgGCGa -3'
miRNA:   3'- gCGCU--AGCUGUG--ACGGCa--GCGCU-----UGC- -5'
17017 5' -55.2 NC_004333.2 + 32664 0.69 0.513191
Target:  5'- uCGCGcUUGACGCgccGCCGgugaccgcCGCGAGCa -3'
miRNA:   3'- -GCGCuAGCUGUGa--CGGCa-------GCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 30827 0.68 0.620712
Target:  5'- aGaCGGUCGACACcG-CGUCGUaGAACGc -3'
miRNA:   3'- gC-GCUAGCUGUGaCgGCAGCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 30770 0.67 0.664467
Target:  5'- aGCGcGUCGugACcgcGCUG-CGCGAGCa -3'
miRNA:   3'- gCGC-UAGCugUGa--CGGCaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 30272 0.67 0.674269
Target:  5'- gGCGAuugucgucgaguuUCGACggcgagcugGCcGCCGUCGCGccuGCGa -3'
miRNA:   3'- gCGCU-------------AGCUG---------UGaCGGCAGCGCu--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.