miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 22811 0.7 0.462237
Target:  5'- gGUGuUCGucGCGCUGUCGcUCGUGAACGu -3'
miRNA:   3'- gCGCuAGC--UGUGACGGC-AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 22449 0.69 0.513191
Target:  5'- aCGCGAUggCGAC-CUGCCcgaggcUCGUGAACa -3'
miRNA:   3'- -GCGCUA--GCUGuGACGGc-----AGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 21005 0.67 0.686205
Target:  5'- aGCGcgUGGCA--GCCGUCaCGGGCGa -3'
miRNA:   3'- gCGCuaGCUGUgaCGGCAGcGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 20790 0.67 0.631659
Target:  5'- -aUGA-CGGCACgGCCGUCGCGccgGGCa -3'
miRNA:   3'- gcGCUaGCUGUGaCGGCAGCGC---UUGc -5'
17017 5' -55.2 NC_004333.2 + 20748 0.66 0.728979
Target:  5'- gCGCcuGGUCGACA--GCCGUCGCc-GCGc -3'
miRNA:   3'- -GCG--CUAGCUGUgaCGGCAGCGcuUGC- -5'
17017 5' -55.2 NC_004333.2 + 20734 0.69 0.5663
Target:  5'- gGCGcgCG-CGCUGCCGgacaUCGCcGACGc -3'
miRNA:   3'- gCGCuaGCuGUGACGGC----AGCGcUUGC- -5'
17017 5' -55.2 NC_004333.2 + 20659 0.71 0.414071
Target:  5'- uGCGAUCGACAC-GUCGaUCGCuuACa -3'
miRNA:   3'- gCGCUAGCUGUGaCGGC-AGCGcuUGc -5'
17017 5' -55.2 NC_004333.2 + 19758 0.66 0.718401
Target:  5'- gCGCGAcacCGGCGCgacaCGUUGCGAuuGCGg -3'
miRNA:   3'- -GCGCUa--GCUGUGacg-GCAGCGCU--UGC- -5'
17017 5' -55.2 NC_004333.2 + 19490 0.77 0.176594
Target:  5'- uGCGAUCGGCGCUGgCG-CGCuGGCGg -3'
miRNA:   3'- gCGCUAGCUGUGACgGCaGCGcUUGC- -5'
17017 5' -55.2 NC_004333.2 + 19422 0.67 0.631659
Target:  5'- gCGCGGUCGACGCgGCgcUCGCGcaguuGCu -3'
miRNA:   3'- -GCGCUAGCUGUGaCGgcAGCGCu----UGc -5'
17017 5' -55.2 NC_004333.2 + 18780 0.66 0.728979
Target:  5'- gGCGAaCGGCGuuacGCCGuuugcuUCGCGGGCGa -3'
miRNA:   3'- gCGCUaGCUGUga--CGGC------AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 18424 0.72 0.360539
Target:  5'- uCGCGAUCGGCGgcGUCGacacCGCGAGCGc -3'
miRNA:   3'- -GCGCUAGCUGUgaCGGCa---GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 18365 0.75 0.251389
Target:  5'- gGCGAUCagcaucaacggcccgGugACcGUCGUCGCGAACGa -3'
miRNA:   3'- gCGCUAG---------------CugUGaCGGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 18084 0.69 0.534218
Target:  5'- uCGCGcAUCGACGCguuCCGUCgGCGcuACGg -3'
miRNA:   3'- -GCGC-UAGCUGUGac-GGCAG-CGCu-UGC- -5'
17017 5' -55.2 NC_004333.2 + 17168 0.69 0.544847
Target:  5'- gCGCG-UCGACAagGCCGcUGCGAGCc -3'
miRNA:   3'- -GCGCuAGCUGUgaCGGCaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 16942 0.66 0.707739
Target:  5'- gGCGcugCGcCGCgcgGCCGUCGCGccGGCa -3'
miRNA:   3'- gCGCua-GCuGUGa--CGGCAGCGC--UUGc -5'
17017 5' -55.2 NC_004333.2 + 16838 0.66 0.707739
Target:  5'- aGCGGUCuGAUgaaGCUgGCCGgcaUUGCGGGCGc -3'
miRNA:   3'- gCGCUAG-CUG---UGA-CGGC---AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 16068 0.69 0.5663
Target:  5'- uCGCG-UCGGaACUGCCGUCacUGAACGc -3'
miRNA:   3'- -GCGCuAGCUgUGACGGCAGc-GCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 15634 0.73 0.319754
Target:  5'- aGUGAUCGACGCgagcgcGCCG-CGCGA-CGu -3'
miRNA:   3'- gCGCUAGCUGUGa-----CGGCaGCGCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 15592 0.7 0.4813
Target:  5'- -aCGGUCGcACGCUGCuCGUCggucacgguuucgGCGAACGu -3'
miRNA:   3'- gcGCUAGC-UGUGACG-GCAG-------------CGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.