miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 38554 0.66 0.707739
Target:  5'- aCGCGcucaCGGCaacgacacaGCUGCUGuUCGCGGGCa -3'
miRNA:   3'- -GCGCua--GCUG---------UGACGGC-AGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 8651 0.67 0.641514
Target:  5'- gCGCGGcgcccggcuugcUCGugACggUGCCGUCggcguucagcacgGCGAACGu -3'
miRNA:   3'- -GCGCU------------AGCugUG--ACGGCAG-------------CGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 45029 0.68 0.587963
Target:  5'- cCGCGcgUGGCGCUGgCGgCGCGcaAACGc -3'
miRNA:   3'- -GCGCuaGCUGUGACgGCaGCGC--UUGC- -5'
17017 5' -55.2 NC_004333.2 + 9047 0.68 0.587963
Target:  5'- gGCGAccugCGACACgucgacGCCGaucugCGUGAGCGc -3'
miRNA:   3'- gCGCUa---GCUGUGa-----CGGCa----GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 22879 0.69 0.544847
Target:  5'- gCGCGAUCG-UACUGgCGcUCGUGA-CGa -3'
miRNA:   3'- -GCGCUAGCuGUGACgGC-AGCGCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 22449 0.69 0.513191
Target:  5'- aCGCGAUggCGAC-CUGCCcgaggcUCGUGAACa -3'
miRNA:   3'- -GCGCUA--GCUGuGACGGc-----AGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 9190 0.7 0.472222
Target:  5'- uCGCGA-CGGCAgUGUCGaUCGCGGuGCGc -3'
miRNA:   3'- -GCGCUaGCUGUgACGGC-AGCGCU-UGC- -5'
17017 5' -55.2 NC_004333.2 + 13925 0.71 0.414071
Target:  5'- gGCGAUCGugGCcGCUGcCGCcAGCGu -3'
miRNA:   3'- gCGCUAGCugUGaCGGCaGCGcUUGC- -5'
17017 5' -55.2 NC_004333.2 + 18424 0.72 0.360539
Target:  5'- uCGCGAUCGGCGgcGUCGacacCGCGAGCGc -3'
miRNA:   3'- -GCGCUAGCUGUgaCGGCa---GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 698 0.74 0.282528
Target:  5'- gCGCGAUCG-UGCcGCCGccCGCGAGCGc -3'
miRNA:   3'- -GCGCUAGCuGUGaCGGCa-GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 9607 0.67 0.663376
Target:  5'- gCGCGGcaUCGGCcgguugcgcaccgGCUGCCGgcggCGCGccuGCGc -3'
miRNA:   3'- -GCGCU--AGCUG-------------UGACGGCa---GCGCu--UGC- -5'
17017 5' -55.2 NC_004333.2 + 39236 0.79 0.141985
Target:  5'- aCGCGAUgGACAgcGCCGgCGCGAACGa -3'
miRNA:   3'- -GCGCUAgCUGUgaCGGCaGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 9043 0.78 0.158438
Target:  5'- gGUGAUCGGCAagccgaUGCCGUCGCGcAUGu -3'
miRNA:   3'- gCGCUAGCUGUg-----ACGGCAGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 29751 0.77 0.186349
Target:  5'- uCGCGGugUCGACGCcGCCGaUCGCGAGgCGu -3'
miRNA:   3'- -GCGCU--AGCUGUGaCGGC-AGCGCUU-GC- -5'
17017 5' -55.2 NC_004333.2 + 7239 0.77 0.196576
Target:  5'- uGCGAcCGACugUGgCGUCGCGAAa- -3'
miRNA:   3'- gCGCUaGCUGugACgGCAGCGCUUgc -5'
17017 5' -55.2 NC_004333.2 + 10977 0.76 0.201871
Target:  5'- gCGCGGaacUCGGCACcggcGCgCGUCGUGAGCGg -3'
miRNA:   3'- -GCGCU---AGCUGUGa---CG-GCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 28285 0.68 0.609773
Target:  5'- gCGCGGaUGGCccagaGCUGCUGagCGCGGGCGu -3'
miRNA:   3'- -GCGCUaGCUG-----UGACGGCa-GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 37437 0.68 0.598854
Target:  5'- gCGCGGUaCGAUACgccGCCaGUCGgGAaaACGa -3'
miRNA:   3'- -GCGCUA-GCUGUGa--CGG-CAGCgCU--UGC- -5'
17017 5' -55.2 NC_004333.2 + 40501 0.66 0.695926
Target:  5'- cCGUGGUCGGguucgccggcaguCGaaGCgGUCGUGAACGa -3'
miRNA:   3'- -GCGCUAGCU-------------GUgaCGgCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 41571 0.68 0.598854
Target:  5'- uGCGAcugCGGCGCUgggcggcgcGCCGUgGCGGcgauGCGg -3'
miRNA:   3'- gCGCUa--GCUGUGA---------CGGCAgCGCU----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.