miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 5508 0.66 0.707739
Target:  5'- aGaCGAUCGGCGCUGU---UGCGGGCu -3'
miRNA:   3'- gC-GCUAGCUGUGACGgcaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 39236 0.79 0.141985
Target:  5'- aCGCGAUgGACAgcGCCGgCGCGAACGa -3'
miRNA:   3'- -GCGCUAgCUGUgaCGGCaGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 462 0.72 0.386695
Target:  5'- gGCGcgCGACG-UGCCGgcgagCGUGAACGc -3'
miRNA:   3'- gCGCuaGCUGUgACGGCa----GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 35818 0.71 0.414071
Target:  5'- gGCGcuaCGGCGCccccGaCCGUCGCGAACGu -3'
miRNA:   3'- gCGCua-GCUGUGa---C-GGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 39487 0.68 0.620712
Target:  5'- -aCGGUCGGCACguucGCCGU-GCuGAACGc -3'
miRNA:   3'- gcGCUAGCUGUGa---CGGCAgCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 20790 0.67 0.631659
Target:  5'- -aUGA-CGGCACgGCCGUCGCGccgGGCa -3'
miRNA:   3'- gcGCUaGCUGUGaCGGCAGCGC---UUGc -5'
17017 5' -55.2 NC_004333.2 + 12051 0.68 0.620712
Target:  5'- gCGcCGGUCG-CGCagGCCGUCGCcAACc -3'
miRNA:   3'- -GC-GCUAGCuGUGa-CGGCAGCGcUUGc -5'
17017 5' -55.2 NC_004333.2 + 43322 0.68 0.620712
Target:  5'- aGCGGcaUCGGCACgGCgCG-CGCGuACGg -3'
miRNA:   3'- gCGCU--AGCUGUGaCG-GCaGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 7485 0.68 0.620712
Target:  5'- gGCGAUCGGguUgguguucuuUGCgGUCGCGAguGCGc -3'
miRNA:   3'- gCGCUAGCUguG---------ACGgCAGCGCU--UGC- -5'
17017 5' -55.2 NC_004333.2 + 28285 0.68 0.609773
Target:  5'- gCGCGGaUGGCccagaGCUGCUGagCGCGGGCGu -3'
miRNA:   3'- -GCGCUaGCUG-----UGACGGCa-GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 46152 0.73 0.327627
Target:  5'- aCGUGAUCGAUGCgGCCGUgaCGuCGGGCa -3'
miRNA:   3'- -GCGCUAGCUGUGaCGGCA--GC-GCUUGc -5'
17017 5' -55.2 NC_004333.2 + 39686 0.73 0.327627
Target:  5'- aCGCGGacgUUGugGCUggcucGCCGUCGCGAgguACGa -3'
miRNA:   3'- -GCGCU---AGCugUGA-----CGGCAGCGCU---UGC- -5'
17017 5' -55.2 NC_004333.2 + 9043 0.78 0.158438
Target:  5'- gGUGAUCGGCAagccgaUGCCGUCGCGcAUGu -3'
miRNA:   3'- gCGCUAGCUGUg-----ACGGCAGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 29751 0.77 0.186349
Target:  5'- uCGCGGugUCGACGCcGCCGaUCGCGAGgCGu -3'
miRNA:   3'- -GCGCU--AGCUGUGaCGGC-AGCGCUU-GC- -5'
17017 5' -55.2 NC_004333.2 + 7239 0.77 0.196576
Target:  5'- uGCGAcCGACugUGgCGUCGCGAAa- -3'
miRNA:   3'- gCGCUaGCUGugACgGCAGCGCUUgc -5'
17017 5' -55.2 NC_004333.2 + 10977 0.76 0.201871
Target:  5'- gCGCGGaacUCGGCACcggcGCgCGUCGUGAGCGg -3'
miRNA:   3'- -GCGCU---AGCUGUGa---CG-GCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 44501 0.76 0.218505
Target:  5'- aCGCGA-CGGCuCaGaCCGUCGCGAACGa -3'
miRNA:   3'- -GCGCUaGCUGuGaC-GGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 25201 0.75 0.236296
Target:  5'- gGCGAccgguaccgCGACGCUGCCGgcgGCGAACa -3'
miRNA:   3'- gCGCUa--------GCUGUGACGGCag-CGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 18365 0.75 0.251389
Target:  5'- gGCGAUCagcaucaacggcccgGugACcGUCGUCGCGAACGa -3'
miRNA:   3'- gCGCUAG---------------CugUGaCGGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 15634 0.73 0.319754
Target:  5'- aGUGAUCGACGCgagcgcGCCG-CGCGA-CGu -3'
miRNA:   3'- gCGCUAGCUGUGa-----CGGCaGCGCUuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.