miRNA display CGI


Results 81 - 100 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 462 0.72 0.386695
Target:  5'- gGCGcgCGACG-UGCCGgcgagCGUGAACGc -3'
miRNA:   3'- gCGCuaGCUGUgACGGCa----GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 46152 0.73 0.327627
Target:  5'- aCGUGAUCGAUGCgGCCGUgaCGuCGGGCa -3'
miRNA:   3'- -GCGCUAGCUGUGaCGGCA--GC-GCUUGc -5'
17017 5' -55.2 NC_004333.2 + 39686 0.73 0.327627
Target:  5'- aCGCGGacgUUGugGCUggcucGCCGUCGCGAgguACGa -3'
miRNA:   3'- -GCGCU---AGCugUGA-----CGGCAGCGCU---UGC- -5'
17017 5' -55.2 NC_004333.2 + 15634 0.73 0.319754
Target:  5'- aGUGAUCGACGCgagcgcGCCG-CGCGA-CGu -3'
miRNA:   3'- gCGCUAGCUGUGa-----CGGCaGCGCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 35782 0.73 0.319754
Target:  5'- gGCGG-CGACACUggcgcGCCGggcggggCGCGGGCGg -3'
miRNA:   3'- gCGCUaGCUGUGA-----CGGCa------GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 18365 0.75 0.251389
Target:  5'- gGCGAUCagcaucaacggcccgGugACcGUCGUCGCGAACGa -3'
miRNA:   3'- gCGCUAG---------------CugUGaCGGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 25201 0.75 0.236296
Target:  5'- gGCGAccgguaccgCGACGCUGCCGgcgGCGAACa -3'
miRNA:   3'- gCGCUa--------GCUGUGACGGCag-CGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 44501 0.76 0.218505
Target:  5'- aCGCGA-CGGCuCaGaCCGUCGCGAACGa -3'
miRNA:   3'- -GCGCUaGCUGuGaC-GGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 10977 0.76 0.201871
Target:  5'- gCGCGGaacUCGGCACcggcGCgCGUCGUGAGCGg -3'
miRNA:   3'- -GCGCU---AGCUGUGa---CG-GCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 35818 0.71 0.414071
Target:  5'- gGCGcuaCGGCGCccccGaCCGUCGCGAACGu -3'
miRNA:   3'- gCGCua-GCUGUGa---C-GGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 20659 0.71 0.414071
Target:  5'- uGCGAUCGACAC-GUCGaUCGCuuACa -3'
miRNA:   3'- gCGCUAGCUGUGaCGGC-AGCGcuUGc -5'
17017 5' -55.2 NC_004333.2 + 37068 0.69 0.534218
Target:  5'- gGCGAuuUCGugcCGCUGuUCGUCGCGcACGa -3'
miRNA:   3'- gCGCU--AGCu--GUGAC-GGCAGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 18084 0.69 0.534218
Target:  5'- uCGCGcAUCGACGCguuCCGUCgGCGcuACGg -3'
miRNA:   3'- -GCGC-UAGCUGUGac-GGCAG-CGCu-UGC- -5'
17017 5' -55.2 NC_004333.2 + 42758 0.69 0.527876
Target:  5'- uGcCGA-CGACGCUGCCGcgauggcagaagaaCGCGAACa -3'
miRNA:   3'- gC-GCUaGCUGUGACGGCa-------------GCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 45421 0.7 0.472222
Target:  5'- aCGCGAcCGGCACgGCgGcCGCGAucuCGg -3'
miRNA:   3'- -GCGCUaGCUGUGaCGgCaGCGCUu--GC- -5'
17017 5' -55.2 NC_004333.2 + 47025 0.7 0.462237
Target:  5'- cCGCGAUCGgauauGCAgUGCaaCGUCGCGcGCa -3'
miRNA:   3'- -GCGCUAGC-----UGUgACG--GCAGCGCuUGc -5'
17017 5' -55.2 NC_004333.2 + 27954 0.7 0.462237
Target:  5'- uCGCGGUCGAuCGCcGCCacgaaagCGCGAGCc -3'
miRNA:   3'- -GCGCUAGCU-GUGaCGGca-----GCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 23425 0.71 0.452364
Target:  5'- aGCGAUCGuCGCcGCguUCGUGAGCGg -3'
miRNA:   3'- gCGCUAGCuGUGaCGgcAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 33340 0.71 0.442608
Target:  5'- -cUGAUCGGCAC-GCCGUggucUGCGAAUGa -3'
miRNA:   3'- gcGCUAGCUGUGaCGGCA----GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 34333 0.71 0.432971
Target:  5'- uGCGcUCGACGCggcGcCCGUCGuCGAACc -3'
miRNA:   3'- gCGCuAGCUGUGa--C-GGCAGC-GCUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.