Results 21 - 40 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 41530 | 0.67 | 0.642608 |
Target: 5'- gCGCGccgagCG-CGCUGCCGagCGCGAuCGa -3' miRNA: 3'- -GCGCua---GCuGUGACGGCa-GCGCUuGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 11134 | 0.67 | 0.642608 |
Target: 5'- gCGCGAUCG-CGCUGCUGUC-Ca---- -3' miRNA: 3'- -GCGCUAGCuGUGACGGCAGcGcuugc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 10812 | 0.66 | 0.707739 |
Target: 5'- cCGCG--CGACGCggUGCaCGUCGCGuAGCc -3' miRNA: 3'- -GCGCuaGCUGUG--ACG-GCAGCGC-UUGc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 19758 | 0.66 | 0.718401 |
Target: 5'- gCGCGAcacCGGCGCgacaCGUUGCGAuuGCGg -3' miRNA: 3'- -GCGCUa--GCUGUGacg-GCAGCGCU--UGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 6545 | 0.66 | 0.726871 |
Target: 5'- cCGCGccCGACAauCUGCCGccagagcacgaGCGAGCGc -3' miRNA: 3'- -GCGCuaGCUGU--GACGGCag---------CGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 36337 | 0.66 | 0.726871 |
Target: 5'- aGCGAUguacCGGCGCaagcuggagcgcGCCGUCGCGcuGAUGg -3' miRNA: 3'- gCGCUA----GCUGUGa-----------CGGCAGCGC--UUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 18780 | 0.66 | 0.728979 |
Target: 5'- gGCGAaCGGCGuuacGCCGuuugcuUCGCGGGCGa -3' miRNA: 3'- gCGCUaGCUGUga--CGGC------AGCGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 20748 | 0.66 | 0.728979 |
Target: 5'- gCGCcuGGUCGACA--GCCGUCGCc-GCGc -3' miRNA: 3'- -GCG--CUAGCUGUgaCGGCAGCGcuUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 33005 | 0.66 | 0.728979 |
Target: 5'- aCGCGAccuaCG-CACUGCCGcUCGCucGCc -3' miRNA: 3'- -GCGCUa---GCuGUGACGGC-AGCGcuUGc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 27663 | 0.66 | 0.739461 |
Target: 5'- aGCGAgCGGCGCggcggcgGCCGgcaGCGGuugcGCGg -3' miRNA: 3'- gCGCUaGCUGUGa------CGGCag-CGCU----UGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 16942 | 0.66 | 0.707739 |
Target: 5'- gGCGcugCGcCGCgcgGCCGUCGCGccGGCa -3' miRNA: 3'- gCGCua-GCuGUGa--CGGCAGCGC--UUGc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 16838 | 0.66 | 0.707739 |
Target: 5'- aGCGGUCuGAUgaaGCUgGCCGgcaUUGCGGGCGc -3' miRNA: 3'- gCGCUAG-CUG---UGA-CGGC---AGCGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 3840 | 0.67 | 0.664467 |
Target: 5'- gGCaGAUCGugAUagccguguUGCCGcCGCaGAACGa -3' miRNA: 3'- gCG-CUAGCugUG--------ACGGCaGCG-CUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 30770 | 0.67 | 0.664467 |
Target: 5'- aGCGcGUCGugACcgcGCUG-CGCGAGCa -3' miRNA: 3'- gCGC-UAGCugUGa--CGGCaGCGCUUGc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 2447 | 0.67 | 0.686205 |
Target: 5'- uCGCGAUCGGCACguucgcGCCGggCuCGAGa- -3' miRNA: 3'- -GCGCUAGCUGUGa-----CGGCa-GcGCUUgc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 34401 | 0.67 | 0.686205 |
Target: 5'- aCGUGAgcaaCuACAC-GCCG-CGCGAGCGg -3' miRNA: 3'- -GCGCUa---GcUGUGaCGGCaGCGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 40501 | 0.66 | 0.695926 |
Target: 5'- cCGUGGUCGGguucgccggcaguCGaaGCgGUCGUGAACGa -3' miRNA: 3'- -GCGCUAGCU-------------GUgaCGgCAGCGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 6019 | 0.66 | 0.697003 |
Target: 5'- uGCGAg-GACGCUGuuGcccucgggCGUGAGCGu -3' miRNA: 3'- gCGCUagCUGUGACggCa-------GCGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 5508 | 0.66 | 0.707739 |
Target: 5'- aGaCGAUCGGCGCUGU---UGCGGGCu -3' miRNA: 3'- gC-GCUAGCUGUGACGgcaGCGCUUGc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 8947 | 0.66 | 0.707739 |
Target: 5'- uGCGGUCGagcauuGCACgcagcucgGCCGaCGgGAGCGc -3' miRNA: 3'- gCGCUAGC------UGUGa-------CGGCaGCgCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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