miRNA display CGI


Results 41 - 60 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 36337 0.66 0.726871
Target:  5'- aGCGAUguacCGGCGCaagcuggagcgcGCCGUCGCGcuGAUGg -3'
miRNA:   3'- gCGCUA----GCUGUGa-----------CGGCAGCGC--UUGC- -5'
17017 5' -55.2 NC_004333.2 + 18780 0.66 0.728979
Target:  5'- gGCGAaCGGCGuuacGCCGuuugcuUCGCGGGCGa -3'
miRNA:   3'- gCGCUaGCUGUga--CGGC------AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 20748 0.66 0.728979
Target:  5'- gCGCcuGGUCGACA--GCCGUCGCc-GCGc -3'
miRNA:   3'- -GCG--CUAGCUGUgaCGGCAGCGcuUGC- -5'
17017 5' -55.2 NC_004333.2 + 33005 0.66 0.728979
Target:  5'- aCGCGAccuaCG-CACUGCCGcUCGCucGCc -3'
miRNA:   3'- -GCGCUa---GCuGUGACGGC-AGCGcuUGc -5'
17017 5' -55.2 NC_004333.2 + 27663 0.66 0.739461
Target:  5'- aGCGAgCGGCGCggcggcgGCCGgcaGCGGuugcGCGg -3'
miRNA:   3'- gCGCUaGCUGUGa------CGGCag-CGCU----UGC- -5'
17017 5' -55.2 NC_004333.2 + 40501 0.66 0.695926
Target:  5'- cCGUGGUCGGguucgccggcaguCGaaGCgGUCGUGAACGa -3'
miRNA:   3'- -GCGCUAGCU-------------GUgaCGgCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 34401 0.67 0.686205
Target:  5'- aCGUGAgcaaCuACAC-GCCG-CGCGAGCGg -3'
miRNA:   3'- -GCGCUa---GcUGUGaCGGCaGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 28285 0.68 0.609773
Target:  5'- gCGCGGaUGGCccagaGCUGCUGagCGCGGGCGu -3'
miRNA:   3'- -GCGCUaGCUG-----UGACGGCa-GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 7485 0.68 0.620712
Target:  5'- gGCGAUCGGguUgguguucuuUGCgGUCGCGAguGCGc -3'
miRNA:   3'- gCGCUAGCUguG---------ACGgCAGCGCU--UGC- -5'
17017 5' -55.2 NC_004333.2 + 43322 0.68 0.620712
Target:  5'- aGCGGcaUCGGCACgGCgCG-CGCGuACGg -3'
miRNA:   3'- gCGCU--AGCUGUGaCG-GCaGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 39487 0.68 0.620712
Target:  5'- -aCGGUCGGCACguucGCCGU-GCuGAACGc -3'
miRNA:   3'- gcGCUAGCUGUGa---CGGCAgCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 12051 0.68 0.620712
Target:  5'- gCGcCGGUCG-CGCagGCCGUCGCcAACc -3'
miRNA:   3'- -GC-GCUAGCuGUGa-CGGCAGCGcUUGc -5'
17017 5' -55.2 NC_004333.2 + 20790 0.67 0.631659
Target:  5'- -aUGA-CGGCACgGCCGUCGCGccgGGCa -3'
miRNA:   3'- gcGCUaGCUGUGaCGGCAGCGC---UUGc -5'
17017 5' -55.2 NC_004333.2 + 19422 0.67 0.631659
Target:  5'- gCGCGGUCGACGCgGCgcUCGCGcaguuGCu -3'
miRNA:   3'- -GCGCUAGCUGUGaCGgcAGCGCu----UGc -5'
17017 5' -55.2 NC_004333.2 + 33945 0.67 0.631659
Target:  5'- gCGCGcgCG-CAC-GCCGUCGC-AugGg -3'
miRNA:   3'- -GCGCuaGCuGUGaCGGCAGCGcUugC- -5'
17017 5' -55.2 NC_004333.2 + 41530 0.67 0.642608
Target:  5'- gCGCGccgagCG-CGCUGCCGagCGCGAuCGa -3'
miRNA:   3'- -GCGCua---GCuGUGACGGCa-GCGCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 11134 0.67 0.642608
Target:  5'- gCGCGAUCG-CGCUGCUGUC-Ca---- -3'
miRNA:   3'- -GCGCUAGCuGUGACGGCAGcGcuugc -5'
17017 5' -55.2 NC_004333.2 + 3840 0.67 0.664467
Target:  5'- gGCaGAUCGugAUagccguguUGCCGcCGCaGAACGa -3'
miRNA:   3'- gCG-CUAGCugUG--------ACGGCaGCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 30770 0.67 0.664467
Target:  5'- aGCGcGUCGugACcgcGCUG-CGCGAGCa -3'
miRNA:   3'- gCGC-UAGCugUGa--CGGCaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 2447 0.67 0.686205
Target:  5'- uCGCGAUCGGCACguucgcGCCGggCuCGAGa- -3'
miRNA:   3'- -GCGCUAGCUGUGa-----CGGCa-GcGCUUgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.