Results 61 - 80 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 33945 | 0.67 | 0.631659 |
Target: 5'- gCGCGcgCG-CAC-GCCGUCGC-AugGg -3' miRNA: 3'- -GCGCuaGCuGUGaCGGCAGCGcUugC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 13925 | 0.71 | 0.414071 |
Target: 5'- gGCGAUCGugGCcGCUGcCGCcAGCGu -3' miRNA: 3'- gCGCUAGCugUGaCGGCaGCGcUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 23543 | 0.71 | 0.432971 |
Target: 5'- cCGcCGAUCuGCGuaGCUGUCGCGAACGc -3' miRNA: 3'- -GC-GCUAGcUGUgaCGGCAGCGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 22811 | 0.7 | 0.462237 |
Target: 5'- gGUGuUCGucGCGCUGUCGcUCGUGAACGu -3' miRNA: 3'- gCGCuAGC--UGUGACGGC-AGCGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 9190 | 0.7 | 0.472222 |
Target: 5'- uCGCGA-CGGCAgUGUCGaUCGCGGuGCGc -3' miRNA: 3'- -GCGCUaGCUGUgACGGC-AGCGCU-UGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 15592 | 0.7 | 0.4813 |
Target: 5'- -aCGGUCGcACGCUGCuCGUCggucacgguuucgGCGAACGu -3' miRNA: 3'- gcGCUAGC-UGUGACG-GCAG-------------CGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 30229 | 0.7 | 0.482314 |
Target: 5'- -uCGAUCGACGC-GCCGcgCGCGAucaguGCGu -3' miRNA: 3'- gcGCUAGCUGUGaCGGCa-GCGCU-----UGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 28896 | 0.7 | 0.496616 |
Target: 5'- uCGCGcUCGGCGCaggccggcgcauacuUGCCGUCggugcguaGCGGGCGc -3' miRNA: 3'- -GCGCuAGCUGUG---------------ACGGCAG--------CGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 45261 | 0.7 | 0.502804 |
Target: 5'- aGCGcgCGugGC-GCCuuggcUCGCGAACGa -3' miRNA: 3'- gCGCuaGCugUGaCGGc----AGCGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 41449 | 0.72 | 0.395688 |
Target: 5'- aCGCGggCGAguCgGCCGUCGUGAuccaugGCGa -3' miRNA: 3'- -GCGCuaGCUguGaCGGCAGCGCU------UGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 38423 | 0.72 | 0.395688 |
Target: 5'- gGCGAUCGAgACgcuUGCCG-CGuCGAACu -3' miRNA: 3'- gCGCUAGCUgUG---ACGGCaGC-GCUUGc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 38364 | 0.72 | 0.369119 |
Target: 5'- -cUGAUCGACGC-GCUGUCGCGuguCGg -3' miRNA: 3'- gcGCUAGCUGUGaCGGCAGCGCuu-GC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 5335 | 0.66 | 0.739461 |
Target: 5'- gCGCugGAUCGuCAC-GCCGcCGUGGAUGc -3' miRNA: 3'- -GCG--CUAGCuGUGaCGGCaGCGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 19490 | 0.77 | 0.176594 |
Target: 5'- uGCGAUCGGCGCUGgCG-CGCuGGCGg -3' miRNA: 3'- gCGCUAGCUGUGACgGCaGCGcUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 33349 | 0.76 | 0.212834 |
Target: 5'- gCGCGAgaaCGGCGC-GCCGUCGUgGAACGc -3' miRNA: 3'- -GCGCUa--GCUGUGaCGGCAGCG-CUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 39636 | 0.75 | 0.255285 |
Target: 5'- aGCGGcCGACuGCUGCCGgaCGCGAACu -3' miRNA: 3'- gCGCUaGCUG-UGACGGCa-GCGCUUGc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 698 | 0.74 | 0.282528 |
Target: 5'- gCGCGAUCG-UGCcGCCGccCGCGAGCGc -3' miRNA: 3'- -GCGCUAGCuGUGaCGGCa-GCGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 2490 | 0.73 | 0.312024 |
Target: 5'- aGaCGAUCGACGCUGCC-UCGagauCGGGCGc -3' miRNA: 3'- gC-GCUAGCUGUGACGGcAGC----GCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 47471 | 0.73 | 0.3438 |
Target: 5'- aCGCGccggCGGCgACUGCCG-CGCuGAACGa -3' miRNA: 3'- -GCGCua--GCUG-UGACGGCaGCG-CUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 18424 | 0.72 | 0.360539 |
Target: 5'- uCGCGAUCGGCGgcGUCGacacCGCGAGCGc -3' miRNA: 3'- -GCGCUAGCUGUgaCGGCa---GCGCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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