Results 21 - 40 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17017 | 5' | -55.2 | NC_004333.2 | + | 32973 | 0.67 | 0.686205 |
Target: 5'- uGCGAcuUCGGCAUagUGCUGgaaCGCGAguccgGCGa -3' miRNA: 3'- gCGCU--AGCUGUG--ACGGCa--GCGCU-----UGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 21005 | 0.67 | 0.686205 |
Target: 5'- aGCGcgUGGCA--GCCGUCaCGGGCGa -3' miRNA: 3'- gCGCuaGCUGUgaCGGCAGcGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 2447 | 0.67 | 0.686205 |
Target: 5'- uCGCGAUCGGCACguucgcGCCGggCuCGAGa- -3' miRNA: 3'- -GCGCUAGCUGUGa-----CGGCa-GcGCUUgc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 34401 | 0.67 | 0.686205 |
Target: 5'- aCGUGAgcaaCuACAC-GCCG-CGCGAGCGg -3' miRNA: 3'- -GCGCUa---GcUGUGaCGGCaGCGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 11635 | 0.67 | 0.675356 |
Target: 5'- gCGCGAacgugUCGaaguaGCGCUGCCaguaGUCGCGcaGGCGc -3' miRNA: 3'- -GCGCU-----AGC-----UGUGACGG----CAGCGC--UUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 30272 | 0.67 | 0.674269 |
Target: 5'- gGCGAuugucgucgaguuUCGACggcgagcugGCcGCCGUCGCGccuGCGa -3' miRNA: 3'- gCGCU-------------AGCUG---------UGaCGGCAGCGCu--UGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 30770 | 0.67 | 0.664467 |
Target: 5'- aGCGcGUCGugACcgcGCUG-CGCGAGCa -3' miRNA: 3'- gCGC-UAGCugUGa--CGGCaGCGCUUGc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 3840 | 0.67 | 0.664467 |
Target: 5'- gGCaGAUCGugAUagccguguUGCCGcCGCaGAACGa -3' miRNA: 3'- gCG-CUAGCugUG--------ACGGCaGCG-CUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 27217 | 0.67 | 0.664467 |
Target: 5'- gCGCGGU--ACAUcGCCGUCGUGAucGCa -3' miRNA: 3'- -GCGCUAgcUGUGaCGGCAGCGCU--UGc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 1666 | 0.67 | 0.664467 |
Target: 5'- gCGCGGUCGgaaacaGCGCUuCCGUCGUGcaguACa -3' miRNA: 3'- -GCGCUAGC------UGUGAcGGCAGCGCu---UGc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 29999 | 0.67 | 0.664467 |
Target: 5'- gCGCGAgcaccaugCGGCGCcGCuCGUCGgGAuCGg -3' miRNA: 3'- -GCGCUa-------GCUGUGaCG-GCAGCgCUuGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 9607 | 0.67 | 0.663376 |
Target: 5'- gCGCGGcaUCGGCcgguugcgcaccgGCUGCCGgcggCGCGccuGCGc -3' miRNA: 3'- -GCGCU--AGCUG-------------UGACGGCa---GCGCu--UGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 11973 | 0.67 | 0.653547 |
Target: 5'- aCGCGcGUCGACGaucgcgGCCGuaUCGCGGugcaACGg -3' miRNA: 3'- -GCGC-UAGCUGUga----CGGC--AGCGCU----UGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 10180 | 0.67 | 0.642608 |
Target: 5'- aGCcGUCGACAagaUGCaGUCGCGcACGc -3' miRNA: 3'- gCGcUAGCUGUg--ACGgCAGCGCuUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 11134 | 0.67 | 0.642608 |
Target: 5'- gCGCGAUCG-CGCUGCUGUC-Ca---- -3' miRNA: 3'- -GCGCUAGCuGUGACGGCAGcGcuugc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 41530 | 0.67 | 0.642608 |
Target: 5'- gCGCGccgagCG-CGCUGCCGagCGCGAuCGa -3' miRNA: 3'- -GCGCua---GCuGUGACGGCa-GCGCUuGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 8651 | 0.67 | 0.641514 |
Target: 5'- gCGCGGcgcccggcuugcUCGugACggUGCCGUCggcguucagcacgGCGAACGu -3' miRNA: 3'- -GCGCU------------AGCugUG--ACGGCAG-------------CGCUUGC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 19422 | 0.67 | 0.631659 |
Target: 5'- gCGCGGUCGACGCgGCgcUCGCGcaguuGCu -3' miRNA: 3'- -GCGCUAGCUGUGaCGgcAGCGCu----UGc -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 33945 | 0.67 | 0.631659 |
Target: 5'- gCGCGcgCG-CAC-GCCGUCGC-AugGg -3' miRNA: 3'- -GCGCuaGCuGUGaCGGCAGCGcUugC- -5' |
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17017 | 5' | -55.2 | NC_004333.2 | + | 20790 | 0.67 | 0.631659 |
Target: 5'- -aUGA-CGGCACgGCCGUCGCGccgGGCa -3' miRNA: 3'- gcGCUaGCUGUGaCGGCAGCGC---UUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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