miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17018 3' -58.6 NC_004333.2 + 32077 0.66 0.508449
Target:  5'- cGCGAcgaUCGCauaGAUCGGCGUCGg- -3'
miRNA:   3'- -UGCUug-AGCGgugCUAGCCGCGGCgu -5'
17018 3' -58.6 NC_004333.2 + 25748 0.66 0.508449
Target:  5'- cGCGuucCUCGgCGgucUGAUCGGUGCgCGCAu -3'
miRNA:   3'- -UGCuu-GAGCgGU---GCUAGCCGCG-GCGU- -5'
17018 3' -58.6 NC_004333.2 + 40708 0.66 0.508449
Target:  5'- cCGA--UCGCCGCGAUCgucaccGGCgGCgGCAa -3'
miRNA:   3'- uGCUugAGCGGUGCUAG------CCG-CGgCGU- -5'
17018 3' -58.6 NC_004333.2 + 37452 0.66 0.508449
Target:  5'- gACGAACggCGCCGacauucCGGCGCuCGCc -3'
miRNA:   3'- -UGCUUGa-GCGGUgcua--GCCGCG-GCGu -5'
17018 3' -58.6 NC_004333.2 + 45554 0.66 0.508449
Target:  5'- gAUGAAC-CG-CGCGGUCGGUcuGUCGCGc -3'
miRNA:   3'- -UGCUUGaGCgGUGCUAGCCG--CGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 18409 0.66 0.508449
Target:  5'- cCGaAGCgcaaCGCCucGCGAUCGGCGgCGUc -3'
miRNA:   3'- uGC-UUGa---GCGG--UGCUAGCCGCgGCGu -5'
17018 3' -58.6 NC_004333.2 + 25711 0.66 0.50742
Target:  5'- cGCGAgaauggcuuGCUCGCCGgccagcugcaggcCGGUCGGCGUgaaggucgguUGCGg -3'
miRNA:   3'- -UGCU---------UGAGCGGU-------------GCUAGCCGCG----------GCGU- -5'
17018 3' -58.6 NC_004333.2 + 46339 0.66 0.50742
Target:  5'- aACGAGCgggCGCCguuaugcgccgcuGCGGauUUGGCGCgGCc -3'
miRNA:   3'- -UGCUUGa--GCGG-------------UGCU--AGCCGCGgCGu -5'
17018 3' -58.6 NC_004333.2 + 21752 0.66 0.498204
Target:  5'- gACGAGCUcaacCGCCAgcuCGAcaagccauUCGGCgaaguGCCGCGc -3'
miRNA:   3'- -UGCUUGA----GCGGU---GCU--------AGCCG-----CGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 9279 0.66 0.498204
Target:  5'- uGCGGAUUCGgcuUCACGGUCGGguuuucacCGCCGg- -3'
miRNA:   3'- -UGCUUGAGC---GGUGCUAGCC--------GCGGCgu -5'
17018 3' -58.6 NC_004333.2 + 30000 0.66 0.498204
Target:  5'- cGCGAGCa--CCAUG--CGGCGCCGCu -3'
miRNA:   3'- -UGCUUGagcGGUGCuaGCCGCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 27939 0.66 0.488052
Target:  5'- cGCGAugUaggccaGUCGCGGUCGauCGCCGCc -3'
miRNA:   3'- -UGCUugAg-----CGGUGCUAGCc-GCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 25998 0.66 0.488052
Target:  5'- cCGAAC-CGCCGC---CGGCcGCCGCc -3'
miRNA:   3'- uGCUUGaGCGGUGcuaGCCG-CGGCGu -5'
17018 3' -58.6 NC_004333.2 + 22230 0.66 0.488052
Target:  5'- cGCGuACUgGCCGCcggcAUCGaCGCCGCGc -3'
miRNA:   3'- -UGCuUGAgCGGUGc---UAGCcGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 31165 0.66 0.477999
Target:  5'- cACGAGuCgagCGCgGCGA-CGGCguauGCCGCGa -3'
miRNA:   3'- -UGCUU-Ga--GCGgUGCUaGCCG----CGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 3927 0.66 0.477999
Target:  5'- aGCGGcgGCagGCCGaccggcaGGUUGGCGCCGUu -3'
miRNA:   3'- -UGCU--UGagCGGUg------CUAGCCGCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 19066 0.66 0.477999
Target:  5'- uACGcagaGACgUCGCCAC--UCGGCGCgGCc -3'
miRNA:   3'- -UGC----UUG-AGCGGUGcuAGCCGCGgCGu -5'
17018 3' -58.6 NC_004333.2 + 6968 0.66 0.477999
Target:  5'- gGCGAcagguagccCUCGCCACGAgUCGGUuaaaGuuGCGg -3'
miRNA:   3'- -UGCUu--------GAGCGGUGCU-AGCCG----CggCGU- -5'
17018 3' -58.6 NC_004333.2 + 25605 0.66 0.476999
Target:  5'- cCGAugUCGUgACGA-CGGCGgguuucaCCGCGc -3'
miRNA:   3'- uGCUugAGCGgUGCUaGCCGC-------GGCGU- -5'
17018 3' -58.6 NC_004333.2 + 22880 0.67 0.468049
Target:  5'- cGCGAucguacuggcGCUCGUgACGAgcagaagcgCGGUGCUGCc -3'
miRNA:   3'- -UGCU----------UGAGCGgUGCUa--------GCCGCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.