miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17018 5' -53.5 NC_004333.2 + 42661 0.66 0.744813
Target:  5'- -cCGUCGAGCA--GCcCGCAacAGCgCCGa -3'
miRNA:   3'- gaGCAGCUCGUuuUGcGCGU--UCG-GGU- -5'
17018 5' -53.5 NC_004333.2 + 15343 0.66 0.744813
Target:  5'- aCUUGUCGAucucgGCGcAGACGCGCGcGCUgAa -3'
miRNA:   3'- -GAGCAGCU-----CGU-UUUGCGCGUuCGGgU- -5'
17018 5' -53.5 NC_004333.2 + 35797 0.66 0.734043
Target:  5'- -gCGcCGGGCGGGGCGCggGCGGGCgCUAc -3'
miRNA:   3'- gaGCaGCUCGUUUUGCG--CGUUCG-GGU- -5'
17018 5' -53.5 NC_004333.2 + 25118 0.66 0.73296
Target:  5'- -aCGgCGAGCAcggcGGCGCGCAcguucgcGGCCUg -3'
miRNA:   3'- gaGCaGCUCGUu---UUGCGCGU-------UCGGGu -5'
17018 5' -53.5 NC_004333.2 + 22895 0.67 0.712191
Target:  5'- gCUCGUgaCGAGCAGaAGCGCGguGcuGCCg- -3'
miRNA:   3'- -GAGCA--GCUCGUU-UUGCGCguU--CGGgu -5'
17018 5' -53.5 NC_004333.2 + 5161 0.67 0.712191
Target:  5'- gUUGUCGAGCA--GCGCaGCuugcGCCUg -3'
miRNA:   3'- gAGCAGCUCGUuuUGCG-CGuu--CGGGu -5'
17018 5' -53.5 NC_004333.2 + 46172 0.67 0.712191
Target:  5'- -aCGUCGGGCAucaucCGCGCcGGCgUAa -3'
miRNA:   3'- gaGCAGCUCGUuuu--GCGCGuUCGgGU- -5'
17018 5' -53.5 NC_004333.2 + 21524 0.67 0.701135
Target:  5'- gUCGaCGGGCGcgucGAACGCGUAucGUCCGa -3'
miRNA:   3'- gAGCaGCUCGU----UUUGCGCGUu-CGGGU- -5'
17018 5' -53.5 NC_004333.2 + 22983 0.67 0.701135
Target:  5'- -aCGUCGAGUc--GCGCaGCGAGUUCGa -3'
miRNA:   3'- gaGCAGCUCGuuuUGCG-CGUUCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 3716 0.67 0.701135
Target:  5'- uCUgGUUGAGCGccuCGCGCAccCCCGg -3'
miRNA:   3'- -GAgCAGCUCGUuuuGCGCGUucGGGU- -5'
17018 5' -53.5 NC_004333.2 + 154 0.67 0.690007
Target:  5'- uUCGgcgCGAGCAcacGAUcggcgccugGCGCGAGUCCAc -3'
miRNA:   3'- gAGCa--GCUCGUu--UUG---------CGCGUUCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 6572 0.67 0.678821
Target:  5'- ----aCGAGC-GAGCGCGUggGCCgCAg -3'
miRNA:   3'- gagcaGCUCGuUUUGCGCGuuCGG-GU- -5'
17018 5' -53.5 NC_004333.2 + 20009 0.67 0.678821
Target:  5'- uUUGUCGAGCAccGGAUGCGUAucGCUg- -3'
miRNA:   3'- gAGCAGCUCGU--UUUGCGCGUu-CGGgu -5'
17018 5' -53.5 NC_004333.2 + 16839 0.68 0.667588
Target:  5'- aUCGcUCGAGCAGcGCGuCGC-GGCCa- -3'
miRNA:   3'- gAGC-AGCUCGUUuUGC-GCGuUCGGgu -5'
17018 5' -53.5 NC_004333.2 + 16005 0.68 0.667588
Target:  5'- cCUCGgCGAGU-AAGCGCGUGgccGGCCUg -3'
miRNA:   3'- -GAGCaGCUCGuUUUGCGCGU---UCGGGu -5'
17018 5' -53.5 NC_004333.2 + 2263 0.68 0.667588
Target:  5'- gUUGuUCGAGCGcAGCGCGUuuGCCg- -3'
miRNA:   3'- gAGC-AGCUCGUuUUGCGCGuuCGGgu -5'
17018 5' -53.5 NC_004333.2 + 44964 0.68 0.65632
Target:  5'- aUCGgggCGGGCG--GCGCGCcGGGCCg- -3'
miRNA:   3'- gAGCa--GCUCGUuuUGCGCG-UUCGGgu -5'
17018 5' -53.5 NC_004333.2 + 36213 0.68 0.645029
Target:  5'- aUCGUCGAcGCu--GCGUGCAAggcGCUCGa -3'
miRNA:   3'- gAGCAGCU-CGuuuUGCGCGUU---CGGGU- -5'
17018 5' -53.5 NC_004333.2 + 26516 0.68 0.645029
Target:  5'- aUCuUCGAGCAAAuggccgaucugcGCGCGCAGcauGCCUu -3'
miRNA:   3'- gAGcAGCUCGUUU------------UGCGCGUU---CGGGu -5'
17018 5' -53.5 NC_004333.2 + 16995 0.68 0.645029
Target:  5'- gUUGUCGAGUAcgGCGCGCc-GUCUg -3'
miRNA:   3'- gAGCAGCUCGUuuUGCGCGuuCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.