miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17019 5' -58.1 NC_004333.2 + 10953 0.66 0.525288
Target:  5'- uUCGUUGGUG-CGGGCcacagcgucGCGCGgaacUCGGCa -3'
miRNA:   3'- -AGCAACUGCuGCCCG---------CGCGUa---GGCCG- -5'
17019 5' -58.1 NC_004333.2 + 19929 0.66 0.525288
Target:  5'- ----cGACGACGaGCGCGCcgggCGGCg -3'
miRNA:   3'- agcaaCUGCUGCcCGCGCGuag-GCCG- -5'
17019 5' -58.1 NC_004333.2 + 37445 0.67 0.514967
Target:  5'- gCGgcgUGACGAacGGCGcCGaCAuUCCGGCg -3'
miRNA:   3'- aGCa--ACUGCUgcCCGC-GC-GU-AGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 1037 0.67 0.514967
Target:  5'- aUCGggGACGAac-GCGaUGuCAUCCGGCc -3'
miRNA:   3'- -AGCaaCUGCUgccCGC-GC-GUAGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 43615 0.67 0.514967
Target:  5'- aUCGcuacccgGACGAgcucaCGGccCGUGCGUCCGGCc -3'
miRNA:   3'- -AGCaa-----CUGCU-----GCCc-GCGCGUAGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 45505 0.67 0.51394
Target:  5'- aUCGUcuacaacUGGCgGGCgGGGCGCcccGCAUUCGaGCg -3'
miRNA:   3'- -AGCA-------ACUG-CUG-CCCGCG---CGUAGGC-CG- -5'
17019 5' -58.1 NC_004333.2 + 22178 0.67 0.50473
Target:  5'- cCGgcGGCGGCcGGCG-GCGgUUCGGCg -3'
miRNA:   3'- aGCaaCUGCUGcCCGCgCGU-AGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 4654 0.67 0.50473
Target:  5'- ---aUGGCGACGGGCaggccgGCGCG-CgGGUc -3'
miRNA:   3'- agcaACUGCUGCCCG------CGCGUaGgCCG- -5'
17019 5' -58.1 NC_004333.2 + 443 0.67 0.50473
Target:  5'- cCGgggUGuACGAgGccacGGCGCGCGacgugCCGGCg -3'
miRNA:   3'- aGCa--AC-UGCUgC----CCGCGCGUa----GGCCG- -5'
17019 5' -58.1 NC_004333.2 + 41625 0.67 0.50066
Target:  5'- cUCGUgcucUGGCGGCagauugucGGGCGCGgGcugcggccguacgCCGGCa -3'
miRNA:   3'- -AGCA----ACUGCUG--------CCCGCGCgUa------------GGCCG- -5'
17019 5' -58.1 NC_004333.2 + 19136 0.67 0.494581
Target:  5'- aUCGUgGGCGGCGcGGUGCucGCG-CUGGUu -3'
miRNA:   3'- -AGCAaCUGCUGC-CCGCG--CGUaGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 9299 0.67 0.494581
Target:  5'- ----cGGCG-CGGGUGCGCGgacgggCGGCg -3'
miRNA:   3'- agcaaCUGCuGCCCGCGCGUag----GCCG- -5'
17019 5' -58.1 NC_004333.2 + 11698 0.67 0.494581
Target:  5'- cCGUcGACGcagcgcCGGGCG-GCGUgCUGGCg -3'
miRNA:   3'- aGCAaCUGCu-----GCCCGCgCGUA-GGCCG- -5'
17019 5' -58.1 NC_004333.2 + 13524 0.67 0.484527
Target:  5'- cCGUccGACGugcuCGcGGCGuUGCcgCCGGCg -3'
miRNA:   3'- aGCAa-CUGCu---GC-CCGC-GCGuaGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 9941 0.67 0.484527
Target:  5'- aCGUUGACGaacgGCGcGGCGCGCuugcucgacUCgGGg -3'
miRNA:   3'- aGCAACUGC----UGC-CCGCGCGu--------AGgCCg -5'
17019 5' -58.1 NC_004333.2 + 29881 0.67 0.483527
Target:  5'- gUCGUcGGCGAagcgcugcgcgauCGGGcCGCGCG--CGGCa -3'
miRNA:   3'- -AGCAaCUGCU-------------GCCC-GCGCGUagGCCG- -5'
17019 5' -58.1 NC_004333.2 + 17746 0.67 0.482527
Target:  5'- aCG-UGGCG-CGaggcagucgcuacGGCGCGCGaauucggUCCGGCg -3'
miRNA:   3'- aGCaACUGCuGC-------------CCGCGCGU-------AGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 18539 0.67 0.474571
Target:  5'- ----cGGCGGCaacccGGGUGCgGCAgCCGGCg -3'
miRNA:   3'- agcaaCUGCUG-----CCCGCG-CGUaGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 20842 0.67 0.464719
Target:  5'- ----cGACgGGCGGcCGCGCAUCCuGCu -3'
miRNA:   3'- agcaaCUG-CUGCCcGCGCGUAGGcCG- -5'
17019 5' -58.1 NC_004333.2 + 20093 0.67 0.464719
Target:  5'- cUCGac-ACGAUGaaccagaucGCGCGCAUCUGGCa -3'
miRNA:   3'- -AGCaacUGCUGCc--------CGCGCGUAGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.