miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17020 3' -54.9 NC_004333.2 + 13893 0.67 0.648198
Target:  5'- uCGGCCGGCAcgGgCUGCGCGgcGGcUGCc -3'
miRNA:   3'- -GCCGGCUGU--UgGGCGCGUuuCUcAUG- -5'
17020 3' -54.9 NC_004333.2 + 14100 0.67 0.64151
Target:  5'- aGGauuCGACAAUCUGCGCGgcugcggcgaacacgGGGAGUGg -3'
miRNA:   3'- gCCg--GCUGUUGGGCGCGU---------------UUCUCAUg -5'
17020 3' -54.9 NC_004333.2 + 15207 0.69 0.488825
Target:  5'- aCGGCCGGCAGCaggccggucagacggCCGUaCAGauAGGGUGCc -3'
miRNA:   3'- -GCCGGCUGUUG---------------GGCGcGUU--UCUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 16854 0.66 0.681509
Target:  5'- uGGCCGGCAuugcggGCgCCGUGCucGGcgucggcgcaGGUGCg -3'
miRNA:   3'- gCCGGCUGU------UG-GGCGCGuuUC----------UCAUG- -5'
17020 3' -54.9 NC_004333.2 + 17242 0.67 0.61475
Target:  5'- -aGCCGGCcuGCCCGCGCAugcAGGAcGcGCu -3'
miRNA:   3'- gcCGGCUGu-UGGGCGCGU---UUCU-CaUG- -5'
17020 3' -54.9 NC_004333.2 + 18525 0.7 0.454099
Target:  5'- gCGGCCuucGCAGCCgGCGgCAAcccGGGUGCg -3'
miRNA:   3'- -GCCGGc--UGUUGGgCGC-GUUu--CUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 18807 0.66 0.681509
Target:  5'- gCGGgCGACGAgCCGCuuGAAGugcgcGUGCg -3'
miRNA:   3'- -GCCgGCUGUUgGGCGcgUUUCu----CAUG- -5'
17020 3' -54.9 NC_004333.2 + 18809 0.7 0.458116
Target:  5'- gCGGCCGcaggGCGcgugcugcuaucgaaGCCCGCGCGGc-AGUACg -3'
miRNA:   3'- -GCCGGC----UGU---------------UGGGCGCGUUucUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 19405 0.68 0.592512
Target:  5'- uCGcGCCGccGCGACCCGCGCGGucGAcgcgGCg -3'
miRNA:   3'- -GC-CGGC--UGUUGGGCGCGUUu-CUca--UG- -5'
17020 3' -54.9 NC_004333.2 + 19638 0.68 0.547428
Target:  5'- gCGGCCGACGcuggccgucaacaGCUCGC-CAcGGAGaUACa -3'
miRNA:   3'- -GCCGGCUGU-------------UGGGCGcGUuUCUC-AUG- -5'
17020 3' -54.9 NC_004333.2 + 19768 0.74 0.273323
Target:  5'- uCGGCCGcucCAACgcacgggaucgugCCGCGCGuuGAGUGCg -3'
miRNA:   3'- -GCCGGCu--GUUG-------------GGCGCGUuuCUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 19943 0.67 0.625897
Target:  5'- cCGGgCGGCGAgCCGCcGC---GAGUGCu -3'
miRNA:   3'- -GCCgGCUGUUgGGCG-CGuuuCUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 20753 0.73 0.326964
Target:  5'- uGGUCGACAGCcgucgCCGCGCAGGGu-UACg -3'
miRNA:   3'- gCCGGCUGUUG-----GGCGCGUUUCucAUG- -5'
17020 3' -54.9 NC_004333.2 + 20883 0.66 0.692531
Target:  5'- gGGCggCGACgAGCCCGgCGCAgcGcGUGCu -3'
miRNA:   3'- gCCG--GCUG-UUGGGC-GCGUuuCuCAUG- -5'
17020 3' -54.9 NC_004333.2 + 20959 0.68 0.558339
Target:  5'- gGGCCGgacgcaaacgcgcGCGGCgCGgGCGAGuGGGUGCg -3'
miRNA:   3'- gCCGGC-------------UGUUGgGCgCGUUU-CUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 21478 0.66 0.714383
Target:  5'- cCGGCCGAUuGCCUaugcgacuCGCGAAGuGUGg -3'
miRNA:   3'- -GCCGGCUGuUGGGc-------GCGUUUCuCAUg -5'
17020 3' -54.9 NC_004333.2 + 22864 0.71 0.405583
Target:  5'- gCGGcCCGGCGAUCgGCGCGAuc-GUACu -3'
miRNA:   3'- -GCC-GGCUGUUGGgCGCGUUucuCAUG- -5'
17020 3' -54.9 NC_004333.2 + 24756 0.69 0.516198
Target:  5'- cCGGCCGGCGGCggguaCGUGCcGGGcuaccAGUACg -3'
miRNA:   3'- -GCCGGCUGUUGg----GCGCGuUUC-----UCAUG- -5'
17020 3' -54.9 NC_004333.2 + 26009 0.69 0.495083
Target:  5'- cCGGCCG-CcGCCgGCGaCAAGGAGa-- -3'
miRNA:   3'- -GCCGGCuGuUGGgCGC-GUUUCUCaug -5'
17020 3' -54.9 NC_004333.2 + 26814 0.72 0.360461
Target:  5'- -uGCCGACGGCCCGgccugcagcguCGUAgcGAGUGCu -3'
miRNA:   3'- gcCGGCUGUUGGGC-----------GCGUuuCUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.