Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17020 | 3' | -54.9 | NC_004333.2 | + | 12220 | 0.74 | 0.262935 |
Target: 5'- cCGGCCGGCAACCCccaaucaccugcaggGCGCuucaucAGcAGUACu -3' miRNA: 3'- -GCCGGCUGUUGGG---------------CGCGuu----UC-UCAUG- -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 46581 | 0.68 | 0.548516 |
Target: 5'- gGGCUGAUAGCCUuaGUAcuGAcGAGUACu -3' miRNA: 3'- gCCGGCUGUUGGGcgCGU--UU-CUCAUG- -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 29188 | 0.68 | 0.559434 |
Target: 5'- gGGCCGcuGCAcgaACCCGCGCAuGGcGUc- -3' miRNA: 3'- gCCGGC--UGU---UGGGCGCGUuUCuCAug -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 21478 | 0.66 | 0.714383 |
Target: 5'- cCGGCCGAUuGCCUaugcgacuCGCGAAGuGUGg -3' miRNA: 3'- -GCCGGCUGuUGGGc-------GCGUUUCuCAUg -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 26814 | 0.72 | 0.360461 |
Target: 5'- -uGCCGACGGCCCGgccugcagcguCGUAgcGAGUGCu -3' miRNA: 3'- gcCGGCUGUUGGGC-----------GCGUuuCUCAUG- -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 2307 | 0.71 | 0.387111 |
Target: 5'- uGGCCGGCAcGCCCGCGUugaacuggcGGAaUGCg -3' miRNA: 3'- gCCGGCUGU-UGGGCGCGuu-------UCUcAUG- -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 41914 | 0.71 | 0.415026 |
Target: 5'- uGGCCuGAUggAACCgGacaGCGAGGGGUGCg -3' miRNA: 3'- gCCGG-CUG--UUGGgCg--CGUUUCUCAUG- -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 8224 | 0.71 | 0.420755 |
Target: 5'- gCGGCaggauGACGccgGCCCGCGCGAGGuucugaauacguuGUGCg -3' miRNA: 3'- -GCCGg----CUGU---UGGGCGCGUUUCu------------CAUG- -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 11226 | 0.7 | 0.47437 |
Target: 5'- gGGCgCGGCuccuuGCCgGCGCuc-GAGUGCu -3' miRNA: 3'- gCCG-GCUGu----UGGgCGCGuuuCUCAUG- -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 2702 | 0.68 | 0.548516 |
Target: 5'- gCGGCCGACAGgCCGaucucgucgGCGAAGuuguucGUGCc -3' miRNA: 3'- -GCCGGCUGUUgGGCg--------CGUUUCu-----CAUG- -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 5543 | 0.69 | 0.495083 |
Target: 5'- uGGCCGGCGACggcuUgGCGC---GAGUGCa -3' miRNA: 3'- gCCGGCUGUUG----GgCGCGuuuCUCAUG- -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 18809 | 0.7 | 0.458116 |
Target: 5'- gCGGCCGcaggGCGcgugcugcuaucgaaGCCCGCGCGGc-AGUACg -3' miRNA: 3'- -GCCGGC----UGU---------------UGGGCGCGUUucUCAUG- -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 19768 | 0.74 | 0.273323 |
Target: 5'- uCGGCCGcucCAACgcacgggaucgugCCGCGCGuuGAGUGCg -3' miRNA: 3'- -GCCGGCu--GUUG-------------GGCGCGUuuCUCAUG- -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 46010 | 0.69 | 0.537666 |
Target: 5'- gGGCUGGCAcgGCCUGCGCu-GGcGUAa -3' miRNA: 3'- gCCGGCUGU--UGGGCGCGuuUCuCAUg -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 382 | 0.73 | 0.288416 |
Target: 5'- aGGCCGACAgaguuGCCgaGCGCGuAGAGcGCg -3' miRNA: 3'- gCCGGCUGU-----UGGg-CGCGUuUCUCaUG- -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 18525 | 0.7 | 0.454099 |
Target: 5'- gCGGCCuucGCAGCCgGCGgCAAcccGGGUGCg -3' miRNA: 3'- -GCCGGc--UGUUGGgCGC-GUUu--CUCAUG- -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 19638 | 0.68 | 0.547428 |
Target: 5'- gCGGCCGACGcuggccgucaacaGCUCGC-CAcGGAGaUACa -3' miRNA: 3'- -GCCGGCUGU-------------UGGGCGcGUuUCUC-AUG- -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 20959 | 0.68 | 0.558339 |
Target: 5'- gGGCCGgacgcaaacgcgcGCGGCgCGgGCGAGuGGGUGCg -3' miRNA: 3'- gCCGGC-------------UGUUGgGCgCGUUU-CUCAUG- -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 2030 | 0.72 | 0.357868 |
Target: 5'- aCGGCCG-CAucgaucacgucgacGCCCGCGCGAuAGAGc-- -3' miRNA: 3'- -GCCGGCuGU--------------UGGGCGCGUU-UCUCaug -5' |
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17020 | 3' | -54.9 | NC_004333.2 | + | 22864 | 0.71 | 0.405583 |
Target: 5'- gCGGcCCGGCGAUCgGCGCGAuc-GUACu -3' miRNA: 3'- -GCC-GGCUGUUGGgCGCGUUucuCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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