miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17020 3' -54.9 NC_004333.2 + 37304 0.68 0.596951
Target:  5'- uCGcGCCGGCGuucuuCCCGCGCGGcgucaagcgcgugacAGcGUACu -3'
miRNA:   3'- -GC-CGGCUGUu----GGGCGCGUU---------------UCuCAUG- -5'
17020 3' -54.9 NC_004333.2 + 19405 0.68 0.592512
Target:  5'- uCGcGCCGccGCGACCCGCGCGGucGAcgcgGCg -3'
miRNA:   3'- -GC-CGGC--UGUUGGGCGCGUUu-CUca--UG- -5'
17020 3' -54.9 NC_004333.2 + 8970 0.68 0.592512
Target:  5'- uCGGCCGACGggagcgcgGgCCGUGCugccGGUGCa -3'
miRNA:   3'- -GCCGGCUGU--------UgGGCGCGuuucUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 7955 0.68 0.592512
Target:  5'- uGGCCGGCcGCgUCGCGCAcuucGUACa -3'
miRNA:   3'- gCCGGCUGuUG-GGCGCGUuucuCAUG- -5'
17020 3' -54.9 NC_004333.2 + 38715 0.68 0.592512
Target:  5'- gCGGUgCGGC-ACCCGCGCcu--GGUGCg -3'
miRNA:   3'- -GCCG-GCUGuUGGGCGCGuuucUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 41346 0.68 0.592512
Target:  5'- -aGCCGACGaguGCCC-CGCc-GGAGUGCc -3'
miRNA:   3'- gcCGGCUGU---UGGGcGCGuuUCUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 9276 0.68 0.580335
Target:  5'- uGGCCGugcCGAUCaGCGCGAAGcggcgcgGGUGCg -3'
miRNA:   3'- gCCGGCu--GUUGGgCGCGUUUC-------UCAUG- -5'
17020 3' -54.9 NC_004333.2 + 41743 0.68 0.570411
Target:  5'- uCGGCgCgGGCGACUCGCGCGccGGGcUAUg -3'
miRNA:   3'- -GCCG-G-CUGUUGGGCGCGUuuCUC-AUG- -5'
17020 3' -54.9 NC_004333.2 + 29188 0.68 0.559434
Target:  5'- gGGCCGcuGCAcgaACCCGCGCAuGGcGUc- -3'
miRNA:   3'- gCCGGC--UGU---UGGGCGCGUuUCuCAug -5'
17020 3' -54.9 NC_004333.2 + 36125 0.68 0.559434
Target:  5'- uGG-CGACGGCCUGCGCGAccGGcGCa -3'
miRNA:   3'- gCCgGCUGUUGGGCGCGUUucUCaUG- -5'
17020 3' -54.9 NC_004333.2 + 39199 0.68 0.559434
Target:  5'- cCGGCagcACGGCCCGCGCAucccgucggccGAGcugcGUGCa -3'
miRNA:   3'- -GCCGgc-UGUUGGGCGCGU-----------UUCu---CAUG- -5'
17020 3' -54.9 NC_004333.2 + 20959 0.68 0.558339
Target:  5'- gGGCCGgacgcaaacgcgcGCGGCgCGgGCGAGuGGGUGCg -3'
miRNA:   3'- gCCGGC-------------UGUUGgGCgCGUUU-CUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 3042 0.68 0.552875
Target:  5'- uCGGgCGACGACagguaggcgcgaucgCCGCGCAGAcaggcgucGAGUAUc -3'
miRNA:   3'- -GCCgGCUGUUG---------------GGCGCGUUU--------CUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 2702 0.68 0.548516
Target:  5'- gCGGCCGACAGgCCGaucucgucgGCGAAGuuguucGUGCc -3'
miRNA:   3'- -GCCGGCUGUUgGGCg--------CGUUUCu-----CAUG- -5'
17020 3' -54.9 NC_004333.2 + 46581 0.68 0.548516
Target:  5'- gGGCUGAUAGCCUuaGUAcuGAcGAGUACu -3'
miRNA:   3'- gCCGGCUGUUGGGcgCGU--UU-CUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 19638 0.68 0.547428
Target:  5'- gCGGCCGACGcuggccgucaacaGCUCGC-CAcGGAGaUACa -3'
miRNA:   3'- -GCCGGCUGU-------------UGGGCGcGUuUCUC-AUG- -5'
17020 3' -54.9 NC_004333.2 + 46010 0.69 0.537666
Target:  5'- gGGCUGGCAcgGCCUGCGCu-GGcGUAa -3'
miRNA:   3'- gCCGGCUGU--UGGGCGCGuuUCuCAUg -5'
17020 3' -54.9 NC_004333.2 + 224 0.69 0.526891
Target:  5'- -cGCCGACGACCaGCGCGccGAGc-- -3'
miRNA:   3'- gcCGGCUGUUGGgCGCGUuuCUCaug -5'
17020 3' -54.9 NC_004333.2 + 24756 0.69 0.516198
Target:  5'- cCGGCCGGCGGCggguaCGUGCcGGGcuaccAGUACg -3'
miRNA:   3'- -GCCGGCUGUUGg----GCGCGuUUC-----UCAUG- -5'
17020 3' -54.9 NC_004333.2 + 5543 0.69 0.495083
Target:  5'- uGGCCGGCGACggcuUgGCGC---GAGUGCa -3'
miRNA:   3'- gCCGGCUGUUG----GgCGCGuuuCUCAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.