miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17020 5' -53 NC_004333.2 + 39487 0.66 0.814924
Target:  5'- aCGGUcgGCACGuucgcCGUGCuGaacgcCGACGGCa -3'
miRNA:   3'- -GCCA--UGUGUu----GCACGcCaa---GCUGCCG- -5'
17020 5' -53 NC_004333.2 + 14749 0.66 0.814924
Target:  5'- cCGGacuCGCGGCua-CGGUUCGGCGcGCa -3'
miRNA:   3'- -GCCau-GUGUUGcacGCCAAGCUGC-CG- -5'
17020 5' -53 NC_004333.2 + 25118 0.66 0.805396
Target:  5'- aCGGcgaGCACGGCG-GCGcgcacGUUCG-CGGCc -3'
miRNA:   3'- -GCCa--UGUGUUGCaCGC-----CAAGCuGCCG- -5'
17020 5' -53 NC_004333.2 + 41055 0.66 0.805396
Target:  5'- cCGGUugaacgccuuGCACGACGauuUGGUUCGAC-GCg -3'
miRNA:   3'- -GCCA----------UGUGUUGCac-GCCAAGCUGcCG- -5'
17020 5' -53 NC_004333.2 + 31159 0.67 0.795682
Target:  5'- aGcGUGCACGAguCGaGCGcggCGACGGCg -3'
miRNA:   3'- gC-CAUGUGUU--GCaCGCcaaGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 42541 0.67 0.794701
Target:  5'- cCGGUAacgGCAugGUGCGcGUUgccugcaagcugcCGcACGGCc -3'
miRNA:   3'- -GCCAUg--UGUugCACGC-CAA-------------GC-UGCCG- -5'
17020 5' -53 NC_004333.2 + 29385 0.67 0.785795
Target:  5'- gCGGccGCGCGAUaaGcGCGGUucagCGAUGGCg -3'
miRNA:   3'- -GCCa-UGUGUUG--CaCGCCAa---GCUGCCG- -5'
17020 5' -53 NC_004333.2 + 15497 0.67 0.775744
Target:  5'- aGGgcUGCucGCG-GCGGUcacCGGCGGCg -3'
miRNA:   3'- gCCauGUGu-UGCaCGCCAa--GCUGCCG- -5'
17020 5' -53 NC_004333.2 + 12281 0.67 0.765542
Target:  5'- -cGUACACGGCaccgGCGGcgCGcauuGCGGCg -3'
miRNA:   3'- gcCAUGUGUUGca--CGCCaaGC----UGCCG- -5'
17020 5' -53 NC_004333.2 + 27163 0.67 0.765542
Target:  5'- uCGGcGCGCGaucagccauGCGUGCccccgaGGUgUGGCGGCa -3'
miRNA:   3'- -GCCaUGUGU---------UGCACG------CCAaGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 44379 0.67 0.765542
Target:  5'- aGGUGCGCugcuCG-GCGGcgCGugcGCGGUa -3'
miRNA:   3'- gCCAUGUGuu--GCaCGCCaaGC---UGCCG- -5'
17020 5' -53 NC_004333.2 + 10682 0.68 0.734145
Target:  5'- cCGGUGCACGcuAUGcacuCGGUUCGAC-GCu -3'
miRNA:   3'- -GCCAUGUGU--UGCac--GCCAAGCUGcCG- -5'
17020 5' -53 NC_004333.2 + 8994 0.68 0.734145
Target:  5'- gCGGcgaccgACGCGGCGUucGCGGcuugccaGGCGGCg -3'
miRNA:   3'- -GCCa-----UGUGUUGCA--CGCCaag----CUGCCG- -5'
17020 5' -53 NC_004333.2 + 41076 0.68 0.734145
Target:  5'- ----cCGC-ACGUGCGGUUUGuuGGCa -3'
miRNA:   3'- gccauGUGuUGCACGCCAAGCugCCG- -5'
17020 5' -53 NC_004333.2 + 20706 0.68 0.734145
Target:  5'- aCGGauCGCAGaCGaaUGCGGUgaUGACGGCg -3'
miRNA:   3'- -GCCauGUGUU-GC--ACGCCAa-GCUGCCG- -5'
17020 5' -53 NC_004333.2 + 460 0.68 0.723455
Target:  5'- aCGGcGCGCGACGUGC----CGGCGaGCg -3'
miRNA:   3'- -GCCaUGUGUUGCACGccaaGCUGC-CG- -5'
17020 5' -53 NC_004333.2 + 17849 0.68 0.723455
Target:  5'- cCGGUGCggccgcgcguAUGGCGgGUGGUgucgcaggcgCGACGGCg -3'
miRNA:   3'- -GCCAUG----------UGUUGCaCGCCAa---------GCUGCCG- -5'
17020 5' -53 NC_004333.2 + 18551 0.68 0.712672
Target:  5'- gGGUGCgGCAGC---CGGcgCGGCGGCg -3'
miRNA:   3'- gCCAUG-UGUUGcacGCCaaGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 37498 0.68 0.712672
Target:  5'- cCGaGUGCAUAGCGUGCac--CGGcCGGCg -3'
miRNA:   3'- -GC-CAUGUGUUGCACGccaaGCU-GCCG- -5'
17020 5' -53 NC_004333.2 + 48082 0.68 0.712672
Target:  5'- uCGGUGC-CGACGagGCGca--GGCGGCa -3'
miRNA:   3'- -GCCAUGuGUUGCa-CGCcaagCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.