miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17021 3' -57.4 NC_004333.2 + 14169 0.66 0.577109
Target:  5'- gACC--GGCC-CGAUgCCGggUCGCucGUCg -3'
miRNA:   3'- -UGGacCCGGaGCUA-GGCuuAGCG--CAG- -5'
17021 3' -57.4 NC_004333.2 + 22974 0.66 0.544847
Target:  5'- ---cGGGCgUCGAcgUCGAGUCGCG-Ca -3'
miRNA:   3'- uggaCCCGgAGCUa-GGCUUAGCGCaG- -5'
17021 3' -57.4 NC_004333.2 + 10837 0.66 0.534218
Target:  5'- aGCCaGGGCgacgcaGAUUCGAG-CGCGUCg -3'
miRNA:   3'- -UGGaCCCGgag---CUAGGCUUaGCGCAG- -5'
17021 3' -57.4 NC_004333.2 + 10357 0.67 0.523664
Target:  5'- gUCUGGuaCUCGAUCgCGAcgCGCuUCg -3'
miRNA:   3'- uGGACCcgGAGCUAG-GCUuaGCGcAG- -5'
17021 3' -57.4 NC_004333.2 + 28208 0.67 0.472222
Target:  5'- uCCUGGuuGUCUUGcgcGUCCGGG-CGCGUCa -3'
miRNA:   3'- uGGACC--CGGAGC---UAGGCUUaGCGCAG- -5'
17021 3' -57.4 NC_004333.2 + 46196 0.68 0.462237
Target:  5'- -gCUGGGCgcguCUCGcgCCGGAUCaGCGcCa -3'
miRNA:   3'- ugGACCCG----GAGCuaGGCUUAG-CGCaG- -5'
17021 3' -57.4 NC_004333.2 + 17081 0.69 0.377839
Target:  5'- cGCCgcugacGGGCCagGcgCCGAAccugcaggcgcUCGCGUCg -3'
miRNA:   3'- -UGGa-----CCCGGagCuaGGCUU-----------AGCGCAG- -5'
17021 3' -57.4 NC_004333.2 + 12868 0.7 0.3438
Target:  5'- uCCUGGGCCUgGGcCUGcagUGCGUCg -3'
miRNA:   3'- uGGACCCGGAgCUaGGCuuaGCGCAG- -5'
17021 3' -57.4 NC_004333.2 + 10320 0.7 0.335642
Target:  5'- gGCCUcGGG-CUCGAgUCCGGAcgcgaUCGCGUUc -3'
miRNA:   3'- -UGGA-CCCgGAGCU-AGGCUU-----AGCGCAG- -5'
17021 3' -57.4 NC_004333.2 + 5066 0.74 0.191402
Target:  5'- uCCUGGucgagcguuGCCUCGcgCCGAuacucguugAUCGCGUCu -3'
miRNA:   3'- uGGACC---------CGGAGCuaGGCU---------UAGCGCAG- -5'
17021 3' -57.4 NC_004333.2 + 38063 1.09 0.000552
Target:  5'- gACCUGGGCCUCGAUCCGAAUCGCGUCu -3'
miRNA:   3'- -UGGACCCGGAGCUAGGCUUAGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.