miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17021 5' -58.7 NC_004333.2 + 39208 0.67 0.45857
Target:  5'- cGgcCCGCGcAUCCcgucGGCCGAGCUgCGuGCa -3'
miRNA:   3'- -CauGGCGC-UAGG----CUGGCUCGA-GCcCG- -5'
17021 5' -58.7 NC_004333.2 + 40122 0.67 0.448909
Target:  5'- -cGCCcCGAUgaaggCCG-CCGAGCUCGucGGCg -3'
miRNA:   3'- caUGGcGCUA-----GGCuGGCUCGAGC--CCG- -5'
17021 5' -58.7 NC_004333.2 + 39774 0.67 0.448909
Target:  5'- cUGCagugGaCGAUCCGACCGAcgccGCUCGcGCu -3'
miRNA:   3'- cAUGg---C-GCUAGGCUGGCU----CGAGCcCG- -5'
17021 5' -58.7 NC_004333.2 + 6559 0.67 0.448909
Target:  5'- cUGCCGCcaGAgcaCGAgCGAGCgcgUGGGCc -3'
miRNA:   3'- cAUGGCG--CUag-GCUgGCUCGa--GCCCG- -5'
17021 5' -58.7 NC_004333.2 + 33993 0.67 0.439361
Target:  5'- cUGCCGC-AUCCcgacgagcGACCcGGCaUCGGGCc -3'
miRNA:   3'- cAUGGCGcUAGG--------CUGGcUCG-AGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 27217 0.67 0.439361
Target:  5'- -cGCCGCGcgcguuugcGUCCGGCCccguGGCguagccgcCGGGCg -3'
miRNA:   3'- caUGGCGC---------UAGGCUGGc---UCGa-------GCCCG- -5'
17021 5' -58.7 NC_004333.2 + 46402 0.67 0.429929
Target:  5'- -cGCCGUGAUCUaAgCGGGCa-GGGCu -3'
miRNA:   3'- caUGGCGCUAGGcUgGCUCGagCCCG- -5'
17021 5' -58.7 NC_004333.2 + 6810 0.68 0.420618
Target:  5'- aGUGCuUGCGGUCgGGCgCGuGCUCGaGCg -3'
miRNA:   3'- -CAUG-GCGCUAGgCUG-GCuCGAGCcCG- -5'
17021 5' -58.7 NC_004333.2 + 38633 0.68 0.420618
Target:  5'- gGUGCC-CGuUCUGAUCG-GCcCGGGCg -3'
miRNA:   3'- -CAUGGcGCuAGGCUGGCuCGaGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 20310 0.68 0.415091
Target:  5'- -cGCCGCGAcgugguugccaggcuUgCCGGCCGuGCcgaCGGGUa -3'
miRNA:   3'- caUGGCGCU---------------A-GGCUGGCuCGa--GCCCG- -5'
17021 5' -58.7 NC_004333.2 + 41831 0.68 0.41143
Target:  5'- -gACgGCGc-CCGGCCgcGAGCggUCGGGCa -3'
miRNA:   3'- caUGgCGCuaGGCUGG--CUCG--AGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 18016 0.68 0.402367
Target:  5'- -aGCCGaCGAagCCGGCCGAGUUCuacGCg -3'
miRNA:   3'- caUGGC-GCUa-GGCUGGCUCGAGcc-CG- -5'
17021 5' -58.7 NC_004333.2 + 9538 0.68 0.402367
Target:  5'- cGUGCCGCccGggCCGAUcagaaCGGGCaccaCGGGCa -3'
miRNA:   3'- -CAUGGCG--CuaGGCUG-----GCUCGa---GCCCG- -5'
17021 5' -58.7 NC_004333.2 + 24746 0.68 0.393432
Target:  5'- --gUCGacCGAUCCGGCCG-GCggCGGGUa -3'
miRNA:   3'- cauGGC--GCUAGGCUGGCuCGa-GCCCG- -5'
17021 5' -58.7 NC_004333.2 + 45063 0.68 0.393432
Target:  5'- -cACCGCG---CGGCCGcGCcCGGGCa -3'
miRNA:   3'- caUGGCGCuagGCUGGCuCGaGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 10293 0.68 0.384627
Target:  5'- -aAUCGCGAgcaggCCGAagcgcucaCCGGcCUCGGGCu -3'
miRNA:   3'- caUGGCGCUa----GGCU--------GGCUcGAGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 1760 0.68 0.375953
Target:  5'- -cGCCGCccuuccauucGAUCCaGCCccGCUCGGGUg -3'
miRNA:   3'- caUGGCG----------CUAGGcUGGcuCGAGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 33439 0.68 0.373376
Target:  5'- -aGCCGCGAgUCCGGCagcauuggcagcggCGcGC-CGGGCg -3'
miRNA:   3'- caUGGCGCU-AGGCUG--------------GCuCGaGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 41292 0.69 0.359005
Target:  5'- -gGCgGCGAcuUCgacgaGGCCGAGCUCGcccGGCg -3'
miRNA:   3'- caUGgCGCU--AGg----CUGGCUCGAGC---CCG- -5'
17021 5' -58.7 NC_004333.2 + 10489 0.69 0.350734
Target:  5'- -aGCCGCcacgcgccGggCCGGCCGAcgaGCgggUCGGGCg -3'
miRNA:   3'- caUGGCG--------CuaGGCUGGCU---CG---AGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.