miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17022 3' -56.3 NC_004333.2 + 152 0.66 0.655065
Target:  5'- aGCGCCCaacacgccaGAGCGCGCGGgcaaGCCa- -3'
miRNA:   3'- -CGCGGGcua------UUUGCGCGCUac--CGGca -5'
17022 3' -56.3 NC_004333.2 + 19743 0.66 0.655065
Target:  5'- gGCGCcgcugCCGuc-AACGaCGCGAUcGGCCGc -3'
miRNA:   3'- -CGCG-----GGCuauUUGC-GCGCUA-CCGGCa -5'
17022 3' -56.3 NC_004333.2 + 45527 0.66 0.655065
Target:  5'- gGCGCCCcgcauucGAGCG-GUGGUGGUCGc -3'
miRNA:   3'- -CGCGGGcua----UUUGCgCGCUACCGGCa -5'
17022 3' -56.3 NC_004333.2 + 13974 0.66 0.655065
Target:  5'- gGCGgCCGGU--GCGCGCGA--GCUGc -3'
miRNA:   3'- -CGCgGGCUAuuUGCGCGCUacCGGCa -5'
17022 3' -56.3 NC_004333.2 + 22892 0.66 0.655065
Target:  5'- gGCGCUCGugacGAGCagaaGCGCGGUGcuGCCGc -3'
miRNA:   3'- -CGCGGGCua--UUUG----CGCGCUAC--CGGCa -5'
17022 3' -56.3 NC_004333.2 + 3611 0.66 0.655065
Target:  5'- uCGCCCaGUcGGGCGCcUGcgGGCCGUa -3'
miRNA:   3'- cGCGGGcUA-UUUGCGcGCuaCCGGCA- -5'
17022 3' -56.3 NC_004333.2 + 8943 0.66 0.648482
Target:  5'- cGCGCCgGcgcuguccaucGCGUGCGcgGGCUGg -3'
miRNA:   3'- -CGCGGgCuauu-------UGCGCGCuaCCGGCa -5'
17022 3' -56.3 NC_004333.2 + 44454 0.66 0.64409
Target:  5'- cCGCCCGG-GggUGCGCGA-GGCg-- -3'
miRNA:   3'- cGCGGGCUaUuuGCGCGCUaCCGgca -5'
17022 3' -56.3 NC_004333.2 + 28222 0.66 0.633103
Target:  5'- cGCGUCCGG---GCGCGUcacGGUGaCCGUg -3'
miRNA:   3'- -CGCGGGCUauuUGCGCG---CUACcGGCA- -5'
17022 3' -56.3 NC_004333.2 + 1234 0.66 0.622116
Target:  5'- cGCGCgCCGccuUGGcuGCGCGCGA-GGCUu- -3'
miRNA:   3'- -CGCG-GGCu--AUU--UGCGCGCUaCCGGca -5'
17022 3' -56.3 NC_004333.2 + 34830 0.66 0.622116
Target:  5'- cGCGCCCGuacacCGUGCcGAaagGGUCGUu -3'
miRNA:   3'- -CGCGGGCuauuuGCGCG-CUa--CCGGCA- -5'
17022 3' -56.3 NC_004333.2 + 42582 0.66 0.622116
Target:  5'- -gGCCUGAacguGCGCaugccCGAUGGCCGc -3'
miRNA:   3'- cgCGGGCUauu-UGCGc----GCUACCGGCa -5'
17022 3' -56.3 NC_004333.2 + 18885 0.66 0.622116
Target:  5'- gGCGCCCa--GAACGCauCGAaGGCCGc -3'
miRNA:   3'- -CGCGGGcuaUUUGCGc-GCUaCCGGCa -5'
17022 3' -56.3 NC_004333.2 + 11332 0.66 0.611138
Target:  5'- cGCGCgCGAUGAagGCgGCGCGGUucGUCGUc -3'
miRNA:   3'- -CGCGgGCUAUU--UG-CGCGCUAc-CGGCA- -5'
17022 3' -56.3 NC_004333.2 + 37671 0.66 0.611138
Target:  5'- cGCGCCCGAcc--CGCuCGucGGCCGg -3'
miRNA:   3'- -CGCGGGCUauuuGCGcGCuaCCGGCa -5'
17022 3' -56.3 NC_004333.2 + 28259 0.66 0.611138
Target:  5'- cGCGCUcgucguCGAUGAugcggacgGCGCG-GAUGGCCc- -3'
miRNA:   3'- -CGCGG------GCUAUU--------UGCGCgCUACCGGca -5'
17022 3' -56.3 NC_004333.2 + 41517 0.66 0.600178
Target:  5'- cGCGCCUGcucGAGCGCGcCGAgcgcgcuGCCGa -3'
miRNA:   3'- -CGCGGGCua-UUUGCGC-GCUac-----CGGCa -5'
17022 3' -56.3 NC_004333.2 + 17445 0.66 0.597988
Target:  5'- uCGCCCGGgcaccggauguGGCGCaacGCGAaGGCCGc -3'
miRNA:   3'- cGCGGGCUau---------UUGCG---CGCUaCCGGCa -5'
17022 3' -56.3 NC_004333.2 + 26602 0.67 0.589244
Target:  5'- gGCGUCgCG-UAAGCGuUGCuguccaGAUGGCCGUa -3'
miRNA:   3'- -CGCGG-GCuAUUUGC-GCG------CUACCGGCA- -5'
17022 3' -56.3 NC_004333.2 + 30931 0.67 0.589244
Target:  5'- cGCGUCCuc---AUGCGCGGgcaGGCCGg -3'
miRNA:   3'- -CGCGGGcuauuUGCGCGCUa--CCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.