miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17023 3' -58.8 NC_004333.2 + 2476 0.67 0.459293
Target:  5'- aGCCGCGuuGUucgagACGAUcgACGCUGCCu-- -3'
miRNA:   3'- -CGGCGCgcCA-----UGCUA--UGCGGCGGuca -5'
17023 3' -58.8 NC_004333.2 + 18183 0.67 0.459293
Target:  5'- cGCCGCaUGGUGCuc-GCGCucggCGCCGGUg -3'
miRNA:   3'- -CGGCGcGCCAUGcuaUGCG----GCGGUCA- -5'
17023 3' -58.8 NC_004333.2 + 26336 0.67 0.459293
Target:  5'- cGCCGCgucGCGGUAuuCGAUGggauUGCCGUCGa- -3'
miRNA:   3'- -CGGCG---CGCCAU--GCUAU----GCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 12425 0.67 0.459293
Target:  5'- gGCa-CGCGGUaucugcucugcuAUGGcACGCCGCCGGa -3'
miRNA:   3'- -CGgcGCGCCA------------UGCUaUGCGGCGGUCa -5'
17023 3' -58.8 NC_004333.2 + 19305 0.67 0.458317
Target:  5'- aUCGCGCGGcACGA-GCGCuugagcgCGCCGGc -3'
miRNA:   3'- cGGCGCGCCaUGCUaUGCG-------GCGGUCa -5'
17023 3' -58.8 NC_004333.2 + 45559 0.67 0.449589
Target:  5'- aCCGCGCGGU-CGGUcUGUCGCgCAa- -3'
miRNA:   3'- cGGCGCGCCAuGCUAuGCGGCG-GUca -5'
17023 3' -58.8 NC_004333.2 + 2633 0.67 0.449589
Target:  5'- aCCGCGCGGUucaucGCGCuUGCCGGc -3'
miRNA:   3'- cGGCGCGCCAugcuaUGCG-GCGGUCa -5'
17023 3' -58.8 NC_004333.2 + 42523 0.67 0.449589
Target:  5'- -aCGCGCgagacggcaacuGGUACGAguuCGCCGUCAa- -3'
miRNA:   3'- cgGCGCG------------CCAUGCUau-GCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 42096 0.67 0.44
Target:  5'- uGCUGCGCGacgaggcguGUcGCGAggUGCGCCaguuGCCGGUg -3'
miRNA:   3'- -CGGCGCGC---------CA-UGCU--AUGCGG----CGGUCA- -5'
17023 3' -58.8 NC_004333.2 + 32988 0.67 0.44
Target:  5'- gGCCGUGCGGauUGCGAacgcgaccUACGCacuGCCGc- -3'
miRNA:   3'- -CGGCGCGCC--AUGCU--------AUGCGg--CGGUca -5'
17023 3' -58.8 NC_004333.2 + 45497 0.67 0.44
Target:  5'- cGCCGC-CGGcGCGAcgcUGCaaGCUGCCGGc -3'
miRNA:   3'- -CGGCGcGCCaUGCU---AUG--CGGCGGUCa -5'
17023 3' -58.8 NC_004333.2 + 41743 0.67 0.430529
Target:  5'- uCgGCGCGG-GCGAcuCGCgCGCCGGg -3'
miRNA:   3'- cGgCGCGCCaUGCUauGCG-GCGGUCa -5'
17023 3' -58.8 NC_004333.2 + 45846 0.67 0.430529
Target:  5'- gGCCGCaCGGUGCuc-GCauuCCGCCAGUu -3'
miRNA:   3'- -CGGCGcGCCAUGcuaUGc--GGCGGUCA- -5'
17023 3' -58.8 NC_004333.2 + 4856 0.67 0.430529
Target:  5'- cGCgCGCGCcGUGcCGAUGcCGCUGCCGc- -3'
miRNA:   3'- -CG-GCGCGcCAU-GCUAU-GCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 29587 0.67 0.42771
Target:  5'- uGCCGCGcCGGUcguuuguugcacgaACGGguucggauuCGCCGCCGc- -3'
miRNA:   3'- -CGGCGC-GCCA--------------UGCUau-------GCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 6565 0.68 0.414705
Target:  5'- aGCgGCGCGcGUACGcgcgaaagcccgcauCGCCGCCAc- -3'
miRNA:   3'- -CGgCGCGC-CAUGCuau------------GCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 25324 0.68 0.41195
Target:  5'- uGCCGCGaCGuacGUaACGGUcGCGuuGCCGGUc -3'
miRNA:   3'- -CGGCGC-GC---CA-UGCUA-UGCggCGGUCA- -5'
17023 3' -58.8 NC_004333.2 + 44392 0.68 0.402849
Target:  5'- gGCgGCGCGuGcGCGGUACaacgGCCuGCCGGg -3'
miRNA:   3'- -CGgCGCGC-CaUGCUAUG----CGG-CGGUCa -5'
17023 3' -58.8 NC_004333.2 + 11289 0.68 0.393876
Target:  5'- uGCCGCGCGcuguUGAacUGCGCCGUCGc- -3'
miRNA:   3'- -CGGCGCGCcau-GCU--AUGCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 7805 0.68 0.392097
Target:  5'- gGCCgaGCGCGG-ACGAguaguuuagcuCGCuCGCCAGa -3'
miRNA:   3'- -CGG--CGCGCCaUGCUau---------GCG-GCGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.