miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17023 5' -52.9 NC_004333.2 + 21934 0.67 0.763946
Target:  5'- gCGAag--CAGUCGCGUgGAugAGCGa -3'
miRNA:   3'- -GCUggcaGUUAGCGCAgCUugUCGCa -5'
17023 5' -52.9 NC_004333.2 + 790 0.67 0.753531
Target:  5'- -uGCgCGUCGGUCgGCGcuuucguuucaUCGGGCGGCGUg -3'
miRNA:   3'- gcUG-GCAGUUAG-CGC-----------AGCUUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 27119 0.67 0.753531
Target:  5'- gCGACCcUCGuggaacugCGCuUCGAACGGCGa -3'
miRNA:   3'- -GCUGGcAGUua------GCGcAGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 40337 0.67 0.753531
Target:  5'- uGGCCGgcgCAGgcCGCGUCGAucuGGCGa -3'
miRNA:   3'- gCUGGCa--GUUa-GCGCAGCUug-UCGCa -5'
17023 5' -52.9 NC_004333.2 + 12449 0.67 0.753531
Target:  5'- -cACCGUCGAuaUCGuCGUCGGcCGGCa- -3'
miRNA:   3'- gcUGGCAGUU--AGC-GCAGCUuGUCGca -5'
17023 5' -52.9 NC_004333.2 + 35478 0.68 0.74299
Target:  5'- -cACCGUCAA-CGgGcCGGugAGCGUg -3'
miRNA:   3'- gcUGGCAGUUaGCgCaGCUugUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 23096 0.68 0.74299
Target:  5'- -aGCUGcaUCGGUUGCGUCGGcugaACGGCGg -3'
miRNA:   3'- gcUGGC--AGUUAGCGCAGCU----UGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 10506 0.68 0.74299
Target:  5'- cCGGCCGaCGAgCGgGUCGGGCGcGCGc -3'
miRNA:   3'- -GCUGGCaGUUaGCgCAGCUUGU-CGCa -5'
17023 5' -52.9 NC_004333.2 + 22854 0.68 0.74299
Target:  5'- gCGACCGUUAcguacGUCGCGgcagUCGc-CGGCGUc -3'
miRNA:   3'- -GCUGGCAGU-----UAGCGC----AGCuuGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 16460 0.68 0.74299
Target:  5'- aCGuuCGUCGAgauuccgcagaUCGCGUCGAGCGuCGa -3'
miRNA:   3'- -GCugGCAGUU-----------AGCGCAGCUUGUcGCa -5'
17023 5' -52.9 NC_004333.2 + 21989 0.68 0.732332
Target:  5'- gGGCCGUUuucuUUGCGUCGGcgcgaauCAGCGc -3'
miRNA:   3'- gCUGGCAGuu--AGCGCAGCUu------GUCGCa -5'
17023 5' -52.9 NC_004333.2 + 16819 0.68 0.732332
Target:  5'- cCGGgUGUCGAagcguucguaUCGC-UCGAGCAGCGc -3'
miRNA:   3'- -GCUgGCAGUU----------AGCGcAGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 37386 0.68 0.718325
Target:  5'- gCGGCCGUCcucAUCGUccuacGUCGGcgcucgcgguuugcGCGGCGUg -3'
miRNA:   3'- -GCUGGCAGu--UAGCG-----CAGCU--------------UGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 28016 0.68 0.71507
Target:  5'- uGGCCGUUccagacgucgauacuGAUCGUGUCGcucgugauCGGCGUa -3'
miRNA:   3'- gCUGGCAG---------------UUAGCGCAGCuu------GUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 5058 0.68 0.710719
Target:  5'- uGGCCGacgUCGG-CGCGgcgcUGAACAGCGUc -3'
miRNA:   3'- gCUGGC---AGUUaGCGCa---GCUUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 33380 0.68 0.688788
Target:  5'- -uGCUGccCGAUCGCGUaGAACGGCGa -3'
miRNA:   3'- gcUGGCa-GUUAGCGCAgCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 22973 0.68 0.688788
Target:  5'- gCGGgCGUCGacGUCGaGUCGcGCAGCGa -3'
miRNA:   3'- -GCUgGCAGU--UAGCgCAGCuUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 5955 0.68 0.688788
Target:  5'- uCGGCCGUCGugcgGUCGaaGUCGAGCcGCa- -3'
miRNA:   3'- -GCUGGCAGU----UAGCg-CAGCUUGuCGca -5'
17023 5' -52.9 NC_004333.2 + 45857 0.69 0.677733
Target:  5'- uCGA-UGUCGAUCGUGUCGAAgAGauaGUg -3'
miRNA:   3'- -GCUgGCAGUUAGCGCAGCUUgUCg--CA- -5'
17023 5' -52.9 NC_004333.2 + 26973 0.69 0.666633
Target:  5'- aCGG-CGUCAuUCGUGuccguuucuUCGAGCAGCGg -3'
miRNA:   3'- -GCUgGCAGUuAGCGC---------AGCUUGUCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.