miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17024 3' -56.3 NC_004333.2 + 27608 0.66 0.63356
Target:  5'- cACGGCGcGACCcgacGCGCCGaCgaUCAgcggCGCg -3'
miRNA:   3'- -UGCUGC-UUGG----CGCGGC-GgaAGUa---GCG- -5'
17024 3' -56.3 NC_004333.2 + 7456 0.66 0.63356
Target:  5'- aGCGACuuGCCGcCGCCGgUgaCgAUCGCg -3'
miRNA:   3'- -UGCUGcuUGGC-GCGGCgGaaG-UAGCG- -5'
17024 3' -56.3 NC_004333.2 + 30949 0.66 0.63356
Target:  5'- cCGGCGAuacGCCG-GCgGCCgUCAagCGCg -3'
miRNA:   3'- uGCUGCU---UGGCgCGgCGGaAGUa-GCG- -5'
17024 3' -56.3 NC_004333.2 + 20491 0.66 0.632466
Target:  5'- cCGGCGGcuGCCGCgcaaccgcugccgGCCGCCgccgCGcCGCu -3'
miRNA:   3'- uGCUGCU--UGGCG-------------CGGCGGaa--GUaGCG- -5'
17024 3' -56.3 NC_004333.2 + 33356 0.66 0.622619
Target:  5'- aACGGCGcGCCGUcguggaacgccuGCUGCCcg-AUCGCg -3'
miRNA:   3'- -UGCUGCuUGGCG------------CGGCGGaagUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 17620 0.66 0.622619
Target:  5'- -aGACGccGGCCGCGCCcggugccgugGCCgaCAcguUCGCg -3'
miRNA:   3'- ugCUGC--UUGGCGCGG----------CGGaaGU---AGCG- -5'
17024 3' -56.3 NC_004333.2 + 44837 0.66 0.622619
Target:  5'- gACGACGcuGGCCGCGagaCGCUgaagaagAUCGCc -3'
miRNA:   3'- -UGCUGC--UUGGCGCg--GCGGaag----UAGCG- -5'
17024 3' -56.3 NC_004333.2 + 24463 0.66 0.622619
Target:  5'- cCGACGcAACuCGCGCgaGCCa--AUCGCu -3'
miRNA:   3'- uGCUGC-UUG-GCGCGg-CGGaagUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 466 0.66 0.622619
Target:  5'- cGCGACGuGCCgGCGagCGUgaacgCUUCGUCGUa -3'
miRNA:   3'- -UGCUGCuUGG-CGCg-GCG-----GAAGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 47217 0.66 0.621525
Target:  5'- cGCGACGGG-CGCGCUaCUUUCGagcggauugagcaUCGCa -3'
miRNA:   3'- -UGCUGCUUgGCGCGGcGGAAGU-------------AGCG- -5'
17024 3' -56.3 NC_004333.2 + 27597 0.66 0.611686
Target:  5'- gACGuCGAAUagCGCGgCGCCUUC--UGCa -3'
miRNA:   3'- -UGCuGCUUG--GCGCgGCGGAAGuaGCG- -5'
17024 3' -56.3 NC_004333.2 + 32210 0.66 0.611686
Target:  5'- cGCGAUGAGCa-CGUCGCCgagcgUCuugagcUCGCg -3'
miRNA:   3'- -UGCUGCUUGgcGCGGCGGa----AGu-----AGCG- -5'
17024 3' -56.3 NC_004333.2 + 30233 0.66 0.611686
Target:  5'- uCGACGcGCCGCGC-GCgaUCAgUGCg -3'
miRNA:   3'- uGCUGCuUGGCGCGgCGgaAGUaGCG- -5'
17024 3' -56.3 NC_004333.2 + 8990 0.66 0.611686
Target:  5'- cGCGGCGGcgACCGaCGCgGCgUUCGcggcUUGCc -3'
miRNA:   3'- -UGCUGCU--UGGC-GCGgCGgAAGU----AGCG- -5'
17024 3' -56.3 NC_004333.2 + 17484 0.66 0.611686
Target:  5'- -gGACGAAgUUGcCGCCGCCggCGgcggCGCg -3'
miRNA:   3'- ugCUGCUU-GGC-GCGGCGGaaGUa---GCG- -5'
17024 3' -56.3 NC_004333.2 + 14224 0.66 0.611686
Target:  5'- cGCGACGGGCaucacgGUGCCGUCUgg--CGUa -3'
miRNA:   3'- -UGCUGCUUGg-----CGCGGCGGAaguaGCG- -5'
17024 3' -56.3 NC_004333.2 + 10908 0.67 0.605134
Target:  5'- gACGuCGAucggaaagagcGCCGCGCCGUacggguaggugaaagCUUCGUUGg -3'
miRNA:   3'- -UGCuGCU-----------UGGCGCGGCG---------------GAAGUAGCg -5'
17024 3' -56.3 NC_004333.2 + 3792 0.67 0.600771
Target:  5'- uACcGCGca-CGCGCCGCCgagCAgCGCa -3'
miRNA:   3'- -UGcUGCuugGCGCGGCGGaa-GUaGCG- -5'
17024 3' -56.3 NC_004333.2 + 40875 0.67 0.600771
Target:  5'- cACGugGGguGCCGUGaucuuCCGCCcguucgcCGUCGCg -3'
miRNA:   3'- -UGCugCU--UGGCGC-----GGCGGaa-----GUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 14287 0.67 0.600771
Target:  5'- cACGGC-AACCGCaCCGCU---GUCGCu -3'
miRNA:   3'- -UGCUGcUUGGCGcGGCGGaagUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.