miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17024 5' -54.3 NC_004333.2 + 16857 0.67 0.629794
Target:  5'- -cGCGGcCAAGGCGAUcgacgGGCGaCuGUUCGg -3'
miRNA:   3'- caCGUU-GUUCCGCUG-----CCGC-GuCAAGU- -5'
17024 5' -54.3 NC_004333.2 + 6997 0.67 0.618474
Target:  5'- aGUGCuGCGAGuuGGcCGGUGCAGaUUCAu -3'
miRNA:   3'- -CACGuUGUUCcgCU-GCCGCGUC-AAGU- -5'
17024 5' -54.3 NC_004333.2 + 3305 0.67 0.618474
Target:  5'- uGUGC-GCGcGGCGGCG-CGCGGUUgAa -3'
miRNA:   3'- -CACGuUGUuCCGCUGCcGCGUCAAgU- -5'
17024 5' -54.3 NC_004333.2 + 43261 0.67 0.607166
Target:  5'- -cGCGAUGuuuuggauGGCGACGGCGCAcuaUCGc -3'
miRNA:   3'- caCGUUGUu-------CCGCUGCCGCGUca-AGU- -5'
17024 5' -54.3 NC_004333.2 + 38938 0.68 0.58463
Target:  5'- -cGCGGCGAGGCGcccccguuCGGCGCGa---- -3'
miRNA:   3'- caCGUUGUUCCGCu-------GCCGCGUcaagu -5'
17024 5' -54.3 NC_004333.2 + 46947 0.68 0.57342
Target:  5'- -cGCAGcCAAGGCGGCGcGCGCcGa--- -3'
miRNA:   3'- caCGUU-GUUCCGCUGC-CGCGuCaagu -5'
17024 5' -54.3 NC_004333.2 + 45780 0.68 0.57342
Target:  5'- -gGCGACcAGGCGAccgcCGGCGCcg-UCAu -3'
miRNA:   3'- caCGUUGuUCCGCU----GCCGCGucaAGU- -5'
17024 5' -54.3 NC_004333.2 + 11864 0.68 0.558924
Target:  5'- aUGCGACGcccggcgacuacucGGGCGGCgcguaucgcauGGCGCAGgacgUCGc -3'
miRNA:   3'- cACGUUGU--------------UCCGCUG-----------CCGCGUCa---AGU- -5'
17024 5' -54.3 NC_004333.2 + 39315 0.68 0.551161
Target:  5'- -gGCAGCcgauucgcucGGCGGCGGCGCGcUUCu -3'
miRNA:   3'- caCGUUGuu--------CCGCUGCCGCGUcAAGu -5'
17024 5' -54.3 NC_004333.2 + 32256 0.69 0.53903
Target:  5'- -gGCAGCAGcGGCcgaaagccuuccgGAUGGCGCGGgUCGg -3'
miRNA:   3'- caCGUUGUU-CCG-------------CUGCCGCGUCaAGU- -5'
17024 5' -54.3 NC_004333.2 + 29481 0.69 0.529173
Target:  5'- -cGC-ACGAGGCG--GGCGuCGGUUCAg -3'
miRNA:   3'- caCGuUGUUCCGCugCCGC-GUCAAGU- -5'
17024 5' -54.3 NC_004333.2 + 44380 0.69 0.518299
Target:  5'- gGUGCGcuGCucGGCGGCGcguGCGCGGUaCAa -3'
miRNA:   3'- -CACGU--UGuuCCGCUGC---CGCGUCAaGU- -5'
17024 5' -54.3 NC_004333.2 + 41377 0.69 0.518299
Target:  5'- uUGCGAC-AGGCGAagauCGGCGCGcugUCGu -3'
miRNA:   3'- cACGUUGuUCCGCU----GCCGCGUca-AGU- -5'
17024 5' -54.3 NC_004333.2 + 13009 0.69 0.486243
Target:  5'- aUGCAACugccGGCGAUGGCGguGc--- -3'
miRNA:   3'- cACGUUGuu--CCGCUGCCGCguCaagu -5'
17024 5' -54.3 NC_004333.2 + 35255 0.7 0.473685
Target:  5'- --uCGACAAGGCGACGGaagaauucuucCAGUUCAa -3'
miRNA:   3'- cacGUUGUUCCGCUGCCgc---------GUCAAGU- -5'
17024 5' -54.3 NC_004333.2 + 14815 0.7 0.465403
Target:  5'- -gGCAGCAGGcguuccaCGACGGCGCGccGUUCu -3'
miRNA:   3'- caCGUUGUUCc------GCUGCCGCGU--CAAGu -5'
17024 5' -54.3 NC_004333.2 + 2621 0.7 0.455159
Target:  5'- -cGCGACAGacCGACcGCGCGGUUCAu -3'
miRNA:   3'- caCGUUGUUccGCUGcCGCGUCAAGU- -5'
17024 5' -54.3 NC_004333.2 + 13961 0.7 0.455159
Target:  5'- -gGCGACuucAGGCGGCGGC-CGGUgcgCGc -3'
miRNA:   3'- caCGUUGu--UCCGCUGCCGcGUCAa--GU- -5'
17024 5' -54.3 NC_004333.2 + 20928 0.7 0.455159
Target:  5'- -cGaauACGAGGCGuCGGCGCAGg--- -3'
miRNA:   3'- caCgu-UGUUCCGCuGCCGCGUCaagu -5'
17024 5' -54.3 NC_004333.2 + 17875 0.7 0.445038
Target:  5'- gGUGUcGCAGGcGCGACGGCGgcCAGcUCGc -3'
miRNA:   3'- -CACGuUGUUC-CGCUGCCGC--GUCaAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.