miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17025 3' -56.5 NC_004333.2 + 700 0.67 0.53357
Target:  5'- gCGAuCGUGcCGCCgccCGCgAGCGCCg- -3'
miRNA:   3'- aGCU-GUACuGCGGaa-GCG-UCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 17004 0.67 0.53357
Target:  5'- gCGGCAU-ACGCCgUCGCcGCGCUcgacUCg -3'
miRNA:   3'- aGCUGUAcUGCGGaAGCGuCGCGG----AG- -5'
17025 3' -56.5 NC_004333.2 + 14270 0.67 0.53357
Target:  5'- gCGGCGgcACGCCUUCGagcaucgggaAGUGCUUCu -3'
miRNA:   3'- aGCUGUacUGCGGAAGCg---------UCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 7394 0.67 0.53357
Target:  5'- gCGACAUGACGCgUgccUGCGGCcagGUCUg -3'
miRNA:   3'- aGCUGUACUGCGgAa--GCGUCG---CGGAg -5'
17025 3' -56.5 NC_004333.2 + 10629 0.67 0.53357
Target:  5'- gUCGGCGagcUGACGCacgaGCAGCGCa-- -3'
miRNA:   3'- -AGCUGU---ACUGCGgaagCGUCGCGgag -5'
17025 3' -56.5 NC_004333.2 + 31621 0.67 0.53357
Target:  5'- uUCGACAgcgugacgGACGCCgg-GCAguuGCGCCa- -3'
miRNA:   3'- -AGCUGUa-------CUGCGGaagCGU---CGCGGag -5'
17025 3' -56.5 NC_004333.2 + 45106 0.67 0.53357
Target:  5'- gCGAUAcucGACGCCUgucugCGCGgcgaucGCGCCUa -3'
miRNA:   3'- aGCUGUa--CUGCGGAa----GCGU------CGCGGAg -5'
17025 3' -56.5 NC_004333.2 + 10899 0.67 0.529289
Target:  5'- uUCGACAUcGACGUCgaucggaaagagCGCcGCGCCg- -3'
miRNA:   3'- -AGCUGUA-CUGCGGaa----------GCGuCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 22587 0.67 0.515469
Target:  5'- aCGACAUcGGCGCUcguguugUUCGCGuccgucggguucgucGCGCCUg -3'
miRNA:   3'- aGCUGUA-CUGCGG-------AAGCGU---------------CGCGGAg -5'
17025 3' -56.5 NC_004333.2 + 40166 0.67 0.5123
Target:  5'- gCGACuggacGACGCUggUCGCGGCGUUcaUCa -3'
miRNA:   3'- aGCUGua---CUGCGGa-AGCGUCGCGG--AG- -5'
17025 3' -56.5 NC_004333.2 + 19427 0.67 0.5123
Target:  5'- gUCGACGcGGCGCUcgCGCAGUugcugGCCg- -3'
miRNA:   3'- -AGCUGUaCUGCGGaaGCGUCG-----CGGag -5'
17025 3' -56.5 NC_004333.2 + 26056 0.67 0.501797
Target:  5'- cCGGauuugccaGUGGCGCCgcagCgGCGGCGCUUCc -3'
miRNA:   3'- aGCUg-------UACUGCGGaa--G-CGUCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 30708 0.67 0.501797
Target:  5'- gCGugAgcgcGGCgGCCUUCGCGuuGCGCCa- -3'
miRNA:   3'- aGCugUa---CUG-CGGAAGCGU--CGCGGag -5'
17025 3' -56.5 NC_004333.2 + 16877 0.67 0.501797
Target:  5'- cUCGGCGUcGGCGCaggUGCGGCcgGUCUCg -3'
miRNA:   3'- -AGCUGUA-CUGCGgaaGCGUCG--CGGAG- -5'
17025 3' -56.5 NC_004333.2 + 38467 0.68 0.492425
Target:  5'- gCGACGcgaUGAuugcgcUGCCgcaaugggacggcaCGCAGCGCCUCg -3'
miRNA:   3'- aGCUGU---ACU------GCGGaa------------GCGUCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 35038 0.68 0.491389
Target:  5'- aUCGGCGUGACGCgCUguccUGCGGguUGCCa- -3'
miRNA:   3'- -AGCUGUACUGCG-GAa---GCGUC--GCGGag -5'
17025 3' -56.5 NC_004333.2 + 28241 0.68 0.481082
Target:  5'- gUGAcCGUGACGCgcgCGCGGCGCUc- -3'
miRNA:   3'- aGCU-GUACUGCGgaaGCGUCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 19494 0.68 0.481082
Target:  5'- aUCGGCGcUGGCGCgCUg-GCGGCGCUc- -3'
miRNA:   3'- -AGCUGU-ACUGCG-GAagCGUCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 34355 0.68 0.481082
Target:  5'- gUCGAaccGuCGCCgUCGCuGCGUCUCg -3'
miRNA:   3'- -AGCUguaCuGCGGaAGCGuCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 5387 0.68 0.470881
Target:  5'- gCGGC-UGACGCCUUCaCAuaGCUUCc -3'
miRNA:   3'- aGCUGuACUGCGGAAGcGUcgCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.