Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17025 | 5' | -52.5 | NC_004333.2 | + | 5220 | 0.69 | 0.650479 |
Target: 5'- gCGAGGGUGCGGGuu-GCa--GCGCa- -3' miRNA: 3'- -GCUUCCACGUCCuuuUGcagCGCGac -5' |
|||||||
17025 | 5' | -52.5 | NC_004333.2 | + | 10954 | 0.78 | 0.224991 |
Target: 5'- uCGuuGGUGCGGGccacAGCGUCGCGCg- -3' miRNA: 3'- -GCuuCCACGUCCuu--UUGCAGCGCGac -5' |
|||||||
17025 | 5' | -52.5 | NC_004333.2 | + | 13197 | 0.68 | 0.695481 |
Target: 5'- aCGAucguGUGCAGGc--GCGUCGCGUg- -3' miRNA: 3'- -GCUuc--CACGUCCuuuUGCAGCGCGac -5' |
|||||||
17025 | 5' | -52.5 | NC_004333.2 | + | 23034 | 0.68 | 0.728592 |
Target: 5'- uCGGAGGcaucggGCAGGccgcGAACGUgCGCGCc- -3' miRNA: 3'- -GCUUCCa-----CGUCCu---UUUGCA-GCGCGac -5' |
|||||||
17025 | 5' | -52.5 | NC_004333.2 | + | 23187 | 0.66 | 0.839598 |
Target: 5'- uGAcAGGcgGCGcGGAcgcAGACGUUGCGCUc -3' miRNA: 3'- gCU-UCCa-CGU-CCU---UUUGCAGCGCGAc -5' |
|||||||
17025 | 5' | -52.5 | NC_004333.2 | + | 28386 | 0.67 | 0.782589 |
Target: 5'- aCGgcGGUGCGGGAAccaauaaccgccgcAaucgcaacgugucgcGCcgguGUCGCGCUGa -3' miRNA: 3'- -GCuuCCACGUCCUU--------------U---------------UG----CAGCGCGAC- -5' |
|||||||
17025 | 5' | -52.5 | NC_004333.2 | + | 29453 | 0.66 | 0.836876 |
Target: 5'- uCGAcGGUGC-GGAAGugGgucauuucgacgacUCGCGCg- -3' miRNA: 3'- -GCUuCCACGuCCUUUugC--------------AGCGCGac -5' |
|||||||
17025 | 5' | -52.5 | NC_004333.2 | + | 36695 | 1.09 | 0.001533 |
Target: 5'- gCGAAGGUGCAGGAAAACGUCGCGCUGa -3' miRNA: 3'- -GCUUCCACGUCCUUUUGCAGCGCGAC- -5' |
|||||||
17025 | 5' | -52.5 | NC_004333.2 | + | 40576 | 0.68 | 0.728592 |
Target: 5'- uCGcAGGgcaucaucacGCAGGAGGACGUCcuGCGCa- -3' miRNA: 3'- -GCuUCCa---------CGUCCUUUUGCAG--CGCGac -5' |
|||||||
17025 | 5' | -52.5 | NC_004333.2 | + | 41166 | 0.71 | 0.538154 |
Target: 5'- gCGAAGGUGUAcGAucuGACGUCGgGCc- -3' miRNA: 3'- -GCUUCCACGUcCUu--UUGCAGCgCGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home