miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17026 3' -63.9 NC_004333.2 + 44445 0.66 0.269014
Target:  5'- uGCAUugauCCGCCCGGgGgUGCG-CGAg -3'
miRNA:   3'- uCGUGc---GGCGGGCCgCgACGCaGCUg -5'
17026 3' -63.9 NC_004333.2 + 11927 0.66 0.269014
Target:  5'- cGGCGCGCgCGCCauuaCGcGCGCUccagGCgGUCGAg -3'
miRNA:   3'- -UCGUGCG-GCGG----GC-CGCGA----CG-CAGCUg -5'
17026 3' -63.9 NC_004333.2 + 30721 0.66 0.269014
Target:  5'- aAGCugGCaaGCUCGGcCGUgGCGUCGcCg -3'
miRNA:   3'- -UCGugCGg-CGGGCC-GCGaCGCAGCuG- -5'
17026 3' -63.9 NC_004333.2 + 44422 0.66 0.269014
Target:  5'- gGGCuCGCUGgCUGGUGCgugcgagGCGcUCGGCc -3'
miRNA:   3'- -UCGuGCGGCgGGCCGCGa------CGC-AGCUG- -5'
17026 3' -63.9 NC_004333.2 + 20553 0.66 0.269014
Target:  5'- uGGcCGCGCCGCUgaucguCGGCGCgucGgGUCG-Cg -3'
miRNA:   3'- -UC-GUGCGGCGG------GCCGCGa--CgCAGCuG- -5'
17026 3' -63.9 NC_004333.2 + 17091 0.66 0.269014
Target:  5'- gGGCcagGCGCCGaaCCUgcaGGCGCUcGCGUCGu- -3'
miRNA:   3'- -UCG---UGCGGC--GGG---CCGCGA-CGCAGCug -5'
17026 3' -63.9 NC_004333.2 + 4310 0.66 0.262514
Target:  5'- uGCAgUGCCGCgagcaCCgGGUGCUGCGuuUCGAUu -3'
miRNA:   3'- uCGU-GCGGCG-----GG-CCGCGACGC--AGCUG- -5'
17026 3' -63.9 NC_004333.2 + 6871 0.66 0.262514
Target:  5'- cGCGCGCCgggcgaGCUCGGC-CU-CGUCGAa -3'
miRNA:   3'- uCGUGCGG------CGGGCCGcGAcGCAGCUg -5'
17026 3' -63.9 NC_004333.2 + 24696 0.66 0.262514
Target:  5'- uGCAUGCCGaUCC-GCGC-GCG-CGACa -3'
miRNA:   3'- uCGUGCGGC-GGGcCGCGaCGCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 39090 0.66 0.261229
Target:  5'- cAGCGCaagccagauuuaCCGCgaGGCGCUcacgcagaucgGCGUCGACg -3'
miRNA:   3'- -UCGUGc-----------GGCGggCCGCGA-----------CGCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 47420 0.66 0.256142
Target:  5'- cAGCuacauCGCCGCucgCCGGCGCcaaucCGUuCGACg -3'
miRNA:   3'- -UCGu----GCGGCG---GGCCGCGac---GCA-GCUG- -5'
17026 3' -63.9 NC_004333.2 + 38934 0.66 0.256142
Target:  5'- cGCACGCgGCgaGGCGCcccCGUuCGGCg -3'
miRNA:   3'- uCGUGCGgCGggCCGCGac-GCA-GCUG- -5'
17026 3' -63.9 NC_004333.2 + 27303 0.66 0.256142
Target:  5'- gGGCucguCGCCGCCCauaccuuguGGCGUucgagcaggaUGCG-CGGCc -3'
miRNA:   3'- -UCGu---GCGGCGGG---------CCGCG----------ACGCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 29707 0.66 0.256142
Target:  5'- gGGUACGCC-UCCGGUGCcggguUGCG-CGAa -3'
miRNA:   3'- -UCGUGCGGcGGGCCGCG-----ACGCaGCUg -5'
17026 3' -63.9 NC_004333.2 + 47363 0.66 0.256142
Target:  5'- aAGUGCaGCUGUUCGGUcCUGCGcCGGCg -3'
miRNA:   3'- -UCGUG-CGGCGGGCCGcGACGCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 23016 0.66 0.249897
Target:  5'- -aCACGCCGCCCGccuGCaCUGcCGUCaGCg -3'
miRNA:   3'- ucGUGCGGCGGGC---CGcGAC-GCAGcUG- -5'
17026 3' -63.9 NC_004333.2 + 9641 0.66 0.249897
Target:  5'- cGGCGCGCCugcGCCCGGCuGUU-CGUuuucgggaaaCGGCa -3'
miRNA:   3'- -UCGUGCGG---CGGGCCG-CGAcGCA----------GCUG- -5'
17026 3' -63.9 NC_004333.2 + 18412 0.66 0.249897
Target:  5'- aAGCGCaaCGCCUcGCGaucggcgGCGUCGACa -3'
miRNA:   3'- -UCGUGcgGCGGGcCGCga-----CGCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 37113 0.66 0.249897
Target:  5'- gGGC-CGCaCGCCCGGCGgU-CGagaauUCGACc -3'
miRNA:   3'- -UCGuGCG-GCGGGCCGCgAcGC-----AGCUG- -5'
17026 3' -63.9 NC_004333.2 + 16657 0.66 0.249897
Target:  5'- cAGCACuucgacCUGCCCGGUGCUGCaccgcgCGGu -3'
miRNA:   3'- -UCGUGc-----GGCGGGCCGCGACGca----GCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.