miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17026 5' -53.2 NC_004333.2 + 36112 0.66 0.767698
Target:  5'- aCGuACGcAAGguuGGCgacgGCCUGCGCGACc -3'
miRNA:   3'- aGC-UGC-UUUacuUCG----CGGACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 16925 0.66 0.767698
Target:  5'- cUGACGAAcaccGAgacGGCGCUgcgccGCGCGGCc -3'
miRNA:   3'- aGCUGCUUua--CU---UCGCGGa----CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 20570 0.66 0.758267
Target:  5'- gUCGGCGcgucggGucGCGCCgugguguuucugcagGCGCGGCu -3'
miRNA:   3'- -AGCUGCuuua--CuuCGCGGa--------------CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 41507 0.66 0.757212
Target:  5'- gCGGCG-GAUGc-GCGCCUGCuCGAg -3'
miRNA:   3'- aGCUGCuUUACuuCGCGGACGcGCUg -5'
17026 5' -53.2 NC_004333.2 + 36000 0.66 0.757212
Target:  5'- aCGcCGGAA-GAAGCGgCUcgGCGCGAg -3'
miRNA:   3'- aGCuGCUUUaCUUCGCgGA--CGCGCUg -5'
17026 5' -53.2 NC_004333.2 + 17866 0.66 0.757212
Target:  5'- aUGGCGGGu---GGUGUCgcagGCGCGACg -3'
miRNA:   3'- aGCUGCUUuacuUCGCGGa---CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 45896 0.66 0.757212
Target:  5'- aCGACGAGGcgcucucGAGGUGCUUGC-CGAg -3'
miRNA:   3'- aGCUGCUUUa------CUUCGCGGACGcGCUg -5'
17026 5' -53.2 NC_004333.2 + 41348 0.66 0.757212
Target:  5'- cCGACGAGugccccgccGGAGUGCCgccGUuGCGACa -3'
miRNA:   3'- aGCUGCUUua-------CUUCGCGGa--CG-CGCUG- -5'
17026 5' -53.2 NC_004333.2 + 43109 0.66 0.757212
Target:  5'- cUGACGcuGUucAGCGCC-GCGcCGACg -3'
miRNA:   3'- aGCUGCuuUAcuUCGCGGaCGC-GCUG- -5'
17026 5' -53.2 NC_004333.2 + 9637 0.66 0.757212
Target:  5'- cCGGCGGc-----GCGCCUGCGCccGGCu -3'
miRNA:   3'- aGCUGCUuuacuuCGCGGACGCG--CUG- -5'
17026 5' -53.2 NC_004333.2 + 38259 0.66 0.757212
Target:  5'- gUGAUGcacgcccUGAAGUGCCUGUuCGACg -3'
miRNA:   3'- aGCUGCuuu----ACUUCGCGGACGcGCUG- -5'
17026 5' -53.2 NC_004333.2 + 15268 0.66 0.757212
Target:  5'- gCGACGAuuUGccGUG-CUGCgGCGGCg -3'
miRNA:   3'- aGCUGCUuuACuuCGCgGACG-CGCUG- -5'
17026 5' -53.2 NC_004333.2 + 36165 0.67 0.746591
Target:  5'- gUUGACGua---GAGCGCCUGCaCGAg -3'
miRNA:   3'- -AGCUGCuuuacUUCGCGGACGcGCUg -5'
17026 5' -53.2 NC_004333.2 + 22091 0.67 0.746591
Target:  5'- gUCGccugccCGAAuccgGAAGCGCCgccGCuGCGGCg -3'
miRNA:   3'- -AGCu-----GCUUua--CUUCGCGGa--CG-CGCUG- -5'
17026 5' -53.2 NC_004333.2 + 38939 0.67 0.735849
Target:  5'- gCGGCGA-----GGCGCCcccguucgGCGCGAUg -3'
miRNA:   3'- aGCUGCUuuacuUCGCGGa-------CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 44848 0.67 0.735849
Target:  5'- cCG-CGAGAcgcUGAAGaagauCGCCgcGCGCGACa -3'
miRNA:   3'- aGCuGCUUU---ACUUC-----GCGGa-CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 43905 0.67 0.735849
Target:  5'- aCGAUGuuGUGucgaccGGGCGCacgaacgUGCGCGGCa -3'
miRNA:   3'- aGCUGCuuUAC------UUCGCGg------ACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 27226 0.67 0.724995
Target:  5'- aUCGcCGucGUGAucgcAGCgucuGCCUGCGcCGACg -3'
miRNA:   3'- -AGCuGCuuUACU----UCG----CGGACGC-GCUG- -5'
17026 5' -53.2 NC_004333.2 + 18178 0.67 0.724995
Target:  5'- cCGGCGugccGGGUGAuGCGCUcgucgugcGCGCGGCa -3'
miRNA:   3'- aGCUGC----UUUACUuCGCGGa-------CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 1117 0.67 0.724995
Target:  5'- gUCGcgcGCGAAGUc-GGUGCCgugcugcGCGCGACg -3'
miRNA:   3'- -AGC---UGCUUUAcuUCGCGGa------CGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.