Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17027 | 3' | -60.2 | NC_004333.2 | + | 27839 | 0.68 | 0.347059 |
Target: 5'- -cGgUCGCGguaCCCG--UCGGCaCGGCCGg -3' miRNA: 3'- caCgAGCGC---GGGCaaAGCCG-GCUGGC- -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 28884 | 0.68 | 0.34625 |
Target: 5'- cGUGCcgcgcgaUCGCGCUCGgcgcaGGCCGGCg- -3' miRNA: 3'- -CACG-------AGCGCGGGCaaag-CCGGCUGgc -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 21165 | 0.68 | 0.339029 |
Target: 5'- gGUGCgcuUCGCGCugCCGca--GGCCGGCCu -3' miRNA: 3'- -CACG---AGCGCG--GGCaaagCCGGCUGGc -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 47725 | 0.68 | 0.331919 |
Target: 5'- -gGCacgUCGCGCgCCGUggccucguacacccCGGCCGACUGu -3' miRNA: 3'- caCG---AGCGCG-GGCAaa------------GCCGGCUGGC- -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 11720 | 0.68 | 0.331136 |
Target: 5'- cGUGCUgGCGUCCugcgCGauguccggcaGCCGACCGg -3' miRNA: 3'- -CACGAgCGCGGGcaaaGC----------CGGCUGGC- -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 14866 | 0.68 | 0.331136 |
Target: 5'- cGUGg-CGCGCCgGUUggcucgaugCGGCCGACg- -3' miRNA: 3'- -CACgaGCGCGGgCAAa--------GCCGGCUGgc -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 33285 | 0.68 | 0.331136 |
Target: 5'- -aGCcgagCGCGCgCGUUgcgUCGGCCGcAUCGa -3' miRNA: 3'- caCGa---GCGCGgGCAA---AGCCGGC-UGGC- -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 30477 | 0.68 | 0.315757 |
Target: 5'- -gGCUgCGCcuaccuugucgaGCCCGagcgugCGGCCGACCa -3' miRNA: 3'- caCGA-GCG------------CGGGCaaa---GCCGGCUGGc -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 15117 | 0.69 | 0.300923 |
Target: 5'- uUGC-CaGCGCUCGU---GGCCGACCGc -3' miRNA: 3'- cACGaG-CGCGGGCAaagCCGGCUGGC- -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 34206 | 0.69 | 0.300923 |
Target: 5'- -aGCUCGCGCgCac--CGGCCG-CCGg -3' miRNA: 3'- caCGAGCGCGgGcaaaGCCGGCuGGC- -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 11844 | 0.69 | 0.291573 |
Target: 5'- -aGCUUGCGCCgGUacaucgcuuccgucUgcCGGUCGGCCGa -3' miRNA: 3'- caCGAGCGCGGgCA--------------Aa-GCCGGCUGGC- -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 37501 | 0.69 | 0.266209 |
Target: 5'- aGUGCauagCGUGCaCCGgc-CGGCgCGACCGu -3' miRNA: 3'- -CACGa---GCGCG-GGCaaaGCCG-GCUGGC- -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 4814 | 0.7 | 0.238406 |
Target: 5'- -cGCUCauacgcCGCCCGgaaucuggauagUCGGCUGACCGu -3' miRNA: 3'- caCGAGc-----GCGGGCaa----------AGCCGGCUGGC- -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 38969 | 0.7 | 0.228914 |
Target: 5'- aUGCcCGUGUUCGUgaacCGGCCGAUCGa -3' miRNA: 3'- cACGaGCGCGGGCAaa--GCCGGCUGGC- -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 34825 | 0.71 | 0.223145 |
Target: 5'- cGUGC-CGCGCCCGUacacCGuGCCGAaaGg -3' miRNA: 3'- -CACGaGCGCGGGCAaa--GC-CGGCUggC- -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 8538 | 0.71 | 0.223145 |
Target: 5'- -aGUUCGCGUCCGgcagcagUCGGCCG-CUa -3' miRNA: 3'- caCGAGCGCGGGCaa-----AGCCGGCuGGc -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 2687 | 0.71 | 0.223145 |
Target: 5'- -aGCgUCGCGCCgGcggCGGCCGACa- -3' miRNA: 3'- caCG-AGCGCGGgCaaaGCCGGCUGgc -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 35983 | 0.71 | 0.2175 |
Target: 5'- cGUGCUCGCGaCCUGguucgCGGUCG-CCu -3' miRNA: 3'- -CACGAGCGC-GGGCaaa--GCCGGCuGGc -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 44959 | 0.71 | 0.206577 |
Target: 5'- cUGCgCGCGCaCGUcggCGGCCGACUGc -3' miRNA: 3'- cACGaGCGCGgGCAaa-GCCGGCUGGC- -5' |
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17027 | 3' | -60.2 | NC_004333.2 | + | 31631 | 0.71 | 0.196132 |
Target: 5'- -gGC-CGCGCgCGUgaacagUCGGCCGAUCu -3' miRNA: 3'- caCGaGCGCGgGCAa-----AGCCGGCUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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