miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17027 5' -56.2 NC_004333.2 + 419 0.7 0.367164
Target:  5'- cGGCGAUGUGCuUGGCaCAgucGGCcGGGGUg -3'
miRNA:   3'- -UCGCUACAUG-GCCGcGU---UCGaCCUCG- -5'
17027 5' -56.2 NC_004333.2 + 3984 0.69 0.412692
Target:  5'- -uCGAUGUugCGGCGUuuAGCUGcuGCg -3'
miRNA:   3'- ucGCUACAugGCCGCGu-UCGACcuCG- -5'
17027 5' -56.2 NC_004333.2 + 4538 0.69 0.40331
Target:  5'- uGGUGGUGcagGCCGGaCGCAcgGGCcGuGAGCu -3'
miRNA:   3'- -UCGCUACa--UGGCC-GCGU--UCGaC-CUCG- -5'
17027 5' -56.2 NC_004333.2 + 7706 0.68 0.492277
Target:  5'- uAGCGGUG-AUCGGCGCGgacAGCgacGGAu- -3'
miRNA:   3'- -UCGCUACaUGGCCGCGU---UCGa--CCUcg -5'
17027 5' -56.2 NC_004333.2 + 8948 0.67 0.54544
Target:  5'- cGGCGcUGUccAUCGcguGCGCGGGCUGGAu- -3'
miRNA:   3'- -UCGCuACA--UGGC---CGCGUUCGACCUcg -5'
17027 5' -56.2 NC_004333.2 + 13356 0.7 0.358483
Target:  5'- -aCGGUGUACgGGCGC-GGCacGAGCg -3'
miRNA:   3'- ucGCUACAUGgCCGCGuUCGacCUCG- -5'
17027 5' -56.2 NC_004333.2 + 13646 0.66 0.600316
Target:  5'- cGCGcgGUACuCGG-GC-AGCUGcgcGAGCa -3'
miRNA:   3'- uCGCuaCAUG-GCCgCGuUCGAC---CUCG- -5'
17027 5' -56.2 NC_004333.2 + 13886 0.68 0.481925
Target:  5'- cGCGAaGUcgGCCGGCaCGGGCUGcGcGGCg -3'
miRNA:   3'- uCGCUaCA--UGGCCGcGUUCGAC-C-UCG- -5'
17027 5' -56.2 NC_004333.2 + 13970 0.67 0.556308
Target:  5'- aGGCGGcg-GCCGGUGCGcgcgAGCUGcGcGCg -3'
miRNA:   3'- -UCGCUacaUGGCCGCGU----UCGAC-CuCG- -5'
17027 5' -56.2 NC_004333.2 + 14657 0.66 0.58925
Target:  5'- cGCuGAUGUugCGGCGCAuuucGCgc-AGCu -3'
miRNA:   3'- uCG-CUACAugGCCGCGUu---CGaccUCG- -5'
17027 5' -56.2 NC_004333.2 + 16867 0.69 0.412692
Target:  5'- gGGCGccGUGCuCGGCGUcGGCgcaGGuGCg -3'
miRNA:   3'- -UCGCuaCAUG-GCCGCGuUCGa--CCuCG- -5'
17027 5' -56.2 NC_004333.2 + 19490 0.67 0.523919
Target:  5'- uGCGAUcgGcGCUGGCGC--GCUGGcGGCg -3'
miRNA:   3'- uCGCUA--CaUGGCCGCGuuCGACC-UCG- -5'
17027 5' -56.2 NC_004333.2 + 20968 0.71 0.341555
Target:  5'- cGGCGAUGUACCGcGCG-AAGCacGGucuGCc -3'
miRNA:   3'- -UCGCUACAUGGC-CGCgUUCGa-CCu--CG- -5'
17027 5' -56.2 NC_004333.2 + 21784 0.71 0.325212
Target:  5'- cGGCGAaGUGCC-GCGCGAG-UGGcAGCu -3'
miRNA:   3'- -UCGCUaCAUGGcCGCGUUCgACC-UCG- -5'
17027 5' -56.2 NC_004333.2 + 22880 0.73 0.258927
Target:  5'- cGCGAUcGUACUGGCGCucGUgacGAGCa -3'
miRNA:   3'- uCGCUA-CAUGGCCGCGuuCGac-CUCG- -5'
17027 5' -56.2 NC_004333.2 + 22978 0.69 0.40331
Target:  5'- cAGCGucgcgGUACCGGuCGCcgaGAGCaGGaAGCg -3'
miRNA:   3'- -UCGCua---CAUGGCC-GCG---UUCGaCC-UCG- -5'
17027 5' -56.2 NC_004333.2 + 26580 0.66 0.57712
Target:  5'- uGCGAUcGUGucguugaacguggUCGGCGCGuucacgacaaAGCUGGcGGCg -3'
miRNA:   3'- uCGCUA-CAU-------------GGCCGCGU----------UCGACC-UCG- -5'
17027 5' -56.2 NC_004333.2 + 27724 0.68 0.492277
Target:  5'- uGCGucacgACCGGCGCAGGCUuc-GCg -3'
miRNA:   3'- uCGCuaca-UGGCCGCGUUCGAccuCG- -5'
17027 5' -56.2 NC_004333.2 + 28891 0.72 0.279711
Target:  5'- cGCGAUcGcGCuCGGCGCAGGCcGGcGCa -3'
miRNA:   3'- uCGCUA-CaUG-GCCGCGUUCGaCCuCG- -5'
17027 5' -56.2 NC_004333.2 + 29979 0.68 0.502731
Target:  5'- cGCGcUGccACCGGCGCcGAGC-GcGAGCa -3'
miRNA:   3'- uCGCuACa-UGGCCGCG-UUCGaC-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.