miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17027 5' -56.2 NC_004333.2 + 35784 0.7 0.394064
Target:  5'- cGGCGAc--ACUGGCGCGccgGGC-GGGGCg -3'
miRNA:   3'- -UCGCUacaUGGCCGCGU---UCGaCCUCG- -5'
17027 5' -56.2 NC_004333.2 + 41634 0.7 0.384956
Target:  5'- uGGCGGcagauUGU-CgGGCGCGGGCUGcGGCc -3'
miRNA:   3'- -UCGCU-----ACAuGgCCGCGUUCGACcUCG- -5'
17027 5' -56.2 NC_004333.2 + 419 0.7 0.367164
Target:  5'- cGGCGAUGUGCuUGGCaCAgucGGCcGGGGUg -3'
miRNA:   3'- -UCGCUACAUG-GCCGcGU---UCGaCCUCG- -5'
17027 5' -56.2 NC_004333.2 + 13356 0.7 0.358483
Target:  5'- -aCGGUGUACgGGCGC-GGCacGAGCg -3'
miRNA:   3'- ucGCUACAUGgCCGCGuUCGacCUCG- -5'
17027 5' -56.2 NC_004333.2 + 20968 0.71 0.341555
Target:  5'- cGGCGAUGUACCGcGCG-AAGCacGGucuGCc -3'
miRNA:   3'- -UCGCUACAUGGC-CGCgUUCGa-CCu--CG- -5'
17027 5' -56.2 NC_004333.2 + 21784 0.71 0.325212
Target:  5'- cGGCGAaGUGCC-GCGCGAG-UGGcAGCu -3'
miRNA:   3'- -UCGCUaCAUGGcCGCGUUCgACC-UCG- -5'
17027 5' -56.2 NC_004333.2 + 46233 0.72 0.294292
Target:  5'- aGGCGGcccgcGUcGCCGGUGCGggccAGCUGGuGCa -3'
miRNA:   3'- -UCGCUa----CA-UGGCCGCGU----UCGACCuCG- -5'
17027 5' -56.2 NC_004333.2 + 28891 0.72 0.279711
Target:  5'- cGCGAUcGcGCuCGGCGCAGGCcGGcGCa -3'
miRNA:   3'- uCGCUA-CaUG-GCCGCGUUCGaCCuCG- -5'
17027 5' -56.2 NC_004333.2 + 22880 0.73 0.258927
Target:  5'- cGCGAUcGUACUGGCGCucGUgacGAGCa -3'
miRNA:   3'- uCGCUA-CAUGGCCGCGuuCGac-CUCG- -5'
17027 5' -56.2 NC_004333.2 + 42999 0.75 0.193363
Target:  5'- aGGCGAUGUucaAUCaGGCGCAAGCUGcgcuGCu -3'
miRNA:   3'- -UCGCUACA---UGG-CCGCGUUCGACcu--CG- -5'
17027 5' -56.2 NC_004333.2 + 31106 0.75 0.178194
Target:  5'- cGcCGAUGUuCCGGCGCG-GCUGGAacaccGCg -3'
miRNA:   3'- uC-GCUACAuGGCCGCGUuCGACCU-----CG- -5'
17027 5' -56.2 NC_004333.2 + 40310 0.76 0.159617
Target:  5'- cGCGAUGgGgCGaGCGCGAGCUGGAa- -3'
miRNA:   3'- uCGCUACaUgGC-CGCGUUCGACCUcg -5'
17027 5' -56.2 NC_004333.2 + 36336 1.12 0.000365
Target:  5'- aAGCGAUGUACCGGCGCAAGCUGGAGCg -3'
miRNA:   3'- -UCGCUACAUGGCCGCGUUCGACCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.