Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17028 | 5' | -51.9 | NC_004333.2 | + | 35844 | 1.06 | 0.002908 |
Target: 5'- gAACGUGAAUGCGAACGUCAACCCGCGc -3' miRNA: 3'- -UUGCACUUACGCUUGCAGUUGGGCGC- -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 2836 | 0.72 | 0.502617 |
Target: 5'- cGACGUGAAUGCGGcuuCGaUCAGCgUUGCGg -3' miRNA: 3'- -UUGCACUUACGCUu--GC-AGUUG-GGCGC- -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 46150 | 0.71 | 0.557502 |
Target: 5'- cGACGUGAucgAUGCGGccgugACGUCGggcaucAUCCGCGc -3' miRNA: 3'- -UUGCACU---UACGCU-----UGCAGU------UGGGCGC- -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 38743 | 0.7 | 0.636733 |
Target: 5'- gGACGgcgaaccgGAcgGCGuGCG-CAGCCCGCa -3' miRNA: 3'- -UUGCa-------CUuaCGCuUGCaGUUGGGCGc -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 19863 | 0.7 | 0.648117 |
Target: 5'- uGGCGcGAGUGCGAcCGaUUAcGCCCGCGc -3' miRNA: 3'- -UUGCaCUUACGCUuGC-AGU-UGGGCGC- -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 17250 | 0.7 | 0.648117 |
Target: 5'- gGACGUGAucgucGCGAugaaggcaaGCGUCGACgCGCu -3' miRNA: 3'- -UUGCACUua---CGCU---------UGCAGUUGgGCGc -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 37522 | 0.7 | 0.652667 |
Target: 5'- cACGUGAagaucagucguuccgGUGCGcugcucguGCGUCAGCUCGCc -3' miRNA: 3'- uUGCACU---------------UACGCu-------UGCAGUUGGGCGc -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 38961 | 0.69 | 0.670827 |
Target: 5'- cGCGaUGGAUGCGAA-GUCGgugcGCaCCGCGa -3' miRNA: 3'- uUGC-ACUUACGCUUgCAGU----UG-GGCGC- -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 18179 | 0.69 | 0.682129 |
Target: 5'- cGGCGUGccggguGAUGCGcuCGUCGugCgCGCGg -3' miRNA: 3'- -UUGCAC------UUACGCuuGCAGUugG-GCGC- -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 22609 | 0.68 | 0.715681 |
Target: 5'- aGGCGcUGuuUGCGcagcugaucgccAAUGUCGACCCGCu -3' miRNA: 3'- -UUGC-ACuuACGC------------UUGCAGUUGGGCGc -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 30094 | 0.68 | 0.715681 |
Target: 5'- cGACG-GAAcGCGucgauGCG-CGACCCGCGc -3' miRNA: 3'- -UUGCaCUUaCGCu----UGCaGUUGGGCGC- -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 15615 | 0.68 | 0.726705 |
Target: 5'- cACGguuucgGCGAACGUCGugCCGUu -3' miRNA: 3'- uUGCacuua-CGCUUGCAGUugGGCGc -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 19375 | 0.68 | 0.77071 |
Target: 5'- cGACGUGGAcgcacuauacGCGAugGgaagucgcgccgccgCGACCCGCGc -3' miRNA: 3'- -UUGCACUUa---------CGCUugCa--------------GUUGGGCGC- -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 41499 | 0.67 | 0.790283 |
Target: 5'- cACGUGAAgcgGCGGAUG-CGcGCCUGCu -3' miRNA: 3'- uUGCACUUa--CGCUUGCaGU-UGGGCGc -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 30083 | 0.67 | 0.800334 |
Target: 5'- ----cGAAUGCGGACGUgGcgcGCUCGCa -3' miRNA: 3'- uugcaCUUACGCUUGCAgU---UGGGCGc -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 47568 | 0.67 | 0.800334 |
Target: 5'- cGGCGauGGUGCGAAaucgGUgGACCCGCa -3' miRNA: 3'- -UUGCacUUACGCUUg---CAgUUGGGCGc -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 23354 | 0.67 | 0.80922 |
Target: 5'- uGCGcGuuUGUGAGCGUCAccgugccGCCCGUc -3' miRNA: 3'- uUGCaCuuACGCUUGCAGU-------UGGGCGc -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 44435 | 0.67 | 0.81986 |
Target: 5'- --gGUGcGUGCGAgGCGcUCGGCCUGCc -3' miRNA: 3'- uugCACuUACGCU-UGC-AGUUGGGCGc -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 9466 | 0.66 | 0.829311 |
Target: 5'- --gGUGAagGCGAGCGcCGGCggCUGCGg -3' miRNA: 3'- uugCACUuaCGCUUGCaGUUG--GGCGC- -5' |
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17028 | 5' | -51.9 | NC_004333.2 | + | 22538 | 0.66 | 0.838541 |
Target: 5'- gAACGUGAuguUGcCGAGCGaCGAgCgCGCGg -3' miRNA: 3'- -UUGCACUu--AC-GCUUGCaGUUgG-GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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