miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17030 3' -53.4 NC_004333.2 + 19566 0.66 0.764463
Target:  5'- ---aCGGUCGGCgcGGCAC-AAGGGGAAu -3'
miRNA:   3'- cuucGCUAGCCG--CCGUGcUUUCUCUU- -5'
17030 3' -53.4 NC_004333.2 + 29775 0.66 0.743054
Target:  5'- cGAGGCGuugcgcuUCGGaCGGCACGAGcauGAu -3'
miRNA:   3'- -CUUCGCu------AGCC-GCCGUGCUUucuCUu -5'
17030 3' -53.4 NC_004333.2 + 3307 0.66 0.721163
Target:  5'- --uGCGcgCGGCGGCGCGcgGuuGAAu -3'
miRNA:   3'- cuuCGCuaGCCGCCGUGCuuUcuCUU- -5'
17030 3' -53.4 NC_004333.2 + 7120 0.67 0.653612
Target:  5'- --uGCgGAUUGGCGGCGCGAAAc---- -3'
miRNA:   3'- cuuCG-CUAGCCGCCGUGCUUUcucuu -5'
17030 3' -53.4 NC_004333.2 + 24646 0.68 0.642209
Target:  5'- --cGCaGAUCGGCGGCuaccCGAAAGGc-- -3'
miRNA:   3'- cuuCG-CUAGCCGCCGu---GCUUUCUcuu -5'
17030 3' -53.4 NC_004333.2 + 7568 0.68 0.630796
Target:  5'- -uGGCGGUCGGCGGCagacccauGCGcAGGAc-- -3'
miRNA:   3'- cuUCGCUAGCCGCCG--------UGCuUUCUcuu -5'
17030 3' -53.4 NC_004333.2 + 41701 0.68 0.607984
Target:  5'- cGGGCGGcaacuUCgGGCGGCACGGcgcgaucaacgAGGAGAu -3'
miRNA:   3'- cUUCGCU-----AG-CCGCCGUGCU-----------UUCUCUu -5'
17030 3' -53.4 NC_004333.2 + 23175 0.69 0.585262
Target:  5'- -uGGCGAUCagcgugacaGGCGGCGCGGAcGcAGAc -3'
miRNA:   3'- cuUCGCUAG---------CCGCCGUGCUUuC-UCUu -5'
17030 3' -53.4 NC_004333.2 + 47481 0.69 0.57396
Target:  5'- --cGCGggCGGCGGCACGAu------ -3'
miRNA:   3'- cuuCGCuaGCCGCCGUGCUuucucuu -5'
17030 3' -53.4 NC_004333.2 + 18425 0.69 0.562708
Target:  5'- --cGCGAUCGGCGGCGuCGAcaccgcGAGc- -3'
miRNA:   3'- cuuCGCUAGCCGCCGU-GCUuu----CUCuu -5'
17030 3' -53.4 NC_004333.2 + 36008 0.7 0.475516
Target:  5'- aGAAGCGGcUCGGCGcgagaCACGAGAG-GAAa -3'
miRNA:   3'- -CUUCGCU-AGCCGCc----GUGCUUUCuCUU- -5'
17030 3' -53.4 NC_004333.2 + 19297 0.73 0.35023
Target:  5'- cGAGcGCGAUCGcGCGGCACGAGcgcuuGAGc- -3'
miRNA:   3'- -CUU-CGCUAGC-CGCCGUGCUUu----CUCuu -5'
17030 3' -53.4 NC_004333.2 + 34597 1.07 0.001617
Target:  5'- cGAAGCGAUCGGCGGCACGAAAGAGAAa -3'
miRNA:   3'- -CUUCGCUAGCCGCCGUGCUUUCUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.