miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17030 5' -64.2 NC_004333.2 + 977 0.66 0.271635
Target:  5'- cCGUCgCGGCgacUUGuGCCucuGCUGcGCGGCAGCg -3'
miRNA:   3'- -GUAG-GCCG---GAC-CGG---CGGC-CGCCGUUG- -5'
17030 5' -64.2 NC_004333.2 + 37691 0.66 0.271635
Target:  5'- --gCCGGCCcGGCgCG-UGGCGGCu-- -3'
miRNA:   3'- guaGGCCGGaCCG-GCgGCCGCCGuug -5'
17030 5' -64.2 NC_004333.2 + 40838 0.66 0.271635
Target:  5'- aCGUCgaagaGGCgcgcgccuuCUGGUCGCCGGCGauggucgcGCGACu -3'
miRNA:   3'- -GUAGg----CCG---------GACCGGCGGCCGC--------CGUUG- -5'
17030 5' -64.2 NC_004333.2 + 29094 0.66 0.271635
Target:  5'- ---aCGGUCacacgGGCCgcGCCGaGUGGCGACg -3'
miRNA:   3'- guagGCCGGa----CCGG--CGGC-CGCCGUUG- -5'
17030 5' -64.2 NC_004333.2 + 20514 0.66 0.26507
Target:  5'- --gCCGGCC--GCCGCCGcGCcgcucgcuGGCGGCc -3'
miRNA:   3'- guaGGCCGGacCGGCGGC-CG--------CCGUUG- -5'
17030 5' -64.2 NC_004333.2 + 45160 0.66 0.264421
Target:  5'- --gUCGGCCcgauacUGGCCGCgcuugcugaugcgCaGCGGCAGCu -3'
miRNA:   3'- guaGGCCGG------ACCGGCG-------------GcCGCCGUUG- -5'
17030 5' -64.2 NC_004333.2 + 23668 0.66 0.252327
Target:  5'- --gCC-GCC-GGCCuCCGGCGGCuGCa -3'
miRNA:   3'- guaGGcCGGaCCGGcGGCCGCCGuUG- -5'
17030 5' -64.2 NC_004333.2 + 22867 0.66 0.252327
Target:  5'- aCGUCgCGGCa--GUCGCCGGCGucggcccgguuGCGACg -3'
miRNA:   3'- -GUAG-GCCGgacCGGCGGCCGC-----------CGUUG- -5'
17030 5' -64.2 NC_004333.2 + 29656 0.66 0.246147
Target:  5'- gCcgCCGGCUgcgaaGGCCGCugcagcguccguCGGCgugccGGCAACg -3'
miRNA:   3'- -GuaGGCCGGa----CCGGCG------------GCCG-----CCGUUG- -5'
17030 5' -64.2 NC_004333.2 + 27231 0.66 0.245536
Target:  5'- gCGUCCGGCCccguggcguaGCCGCCgGGCGucggguuGCAAUc -3'
miRNA:   3'- -GUAGGCCGGac--------CGGCGG-CCGC-------CGUUG- -5'
17030 5' -64.2 NC_004333.2 + 17578 0.66 0.240093
Target:  5'- gCGUCCGGCCUGGgguuucUCGgCGaaGCGGuCGAUg -3'
miRNA:   3'- -GUAGGCCGGACC------GGCgGC--CGCC-GUUG- -5'
17030 5' -64.2 NC_004333.2 + 8659 0.66 0.240093
Target:  5'- --cCCGGCUUGcucgugacgguGCCGUCGGCGuuCAGCa -3'
miRNA:   3'- guaGGCCGGAC-----------CGGCGGCCGCc-GUUG- -5'
17030 5' -64.2 NC_004333.2 + 20152 0.66 0.234163
Target:  5'- --aCCGaaaaaGCCUacucGGCCGCCGGCucgGGCGcACa -3'
miRNA:   3'- guaGGC-----CGGA----CCGGCGGCCG---CCGU-UG- -5'
17030 5' -64.2 NC_004333.2 + 29107 0.67 0.222674
Target:  5'- -cUCCGGUCaaUGGauaGCCGGCGGacgguCAGCa -3'
miRNA:   3'- guAGGCCGG--ACCgg-CGGCCGCC-----GUUG- -5'
17030 5' -64.2 NC_004333.2 + 30293 0.67 0.222674
Target:  5'- ---aCGGCgagCUGGCCGCCGucGCGccuGCGACa -3'
miRNA:   3'- guagGCCG---GACCGGCGGC--CGC---CGUUG- -5'
17030 5' -64.2 NC_004333.2 + 6833 0.67 0.222674
Target:  5'- -cUCCGGCggGGCacuCGUCGGCuaccGGCGGCu -3'
miRNA:   3'- guAGGCCGgaCCG---GCGGCCG----CCGUUG- -5'
17030 5' -64.2 NC_004333.2 + 38539 0.67 0.217111
Target:  5'- aCAgCCGGgCgcaGGCgCGCCGcCGGCAGCc -3'
miRNA:   3'- -GUaGGCCgGa--CCG-GCGGCcGCCGUUG- -5'
17030 5' -64.2 NC_004333.2 + 3209 0.67 0.215465
Target:  5'- --gCCGGCCcGGCgCGCCGcccgccccgaugacGCcgGGCAGCa -3'
miRNA:   3'- guaGGCCGGaCCG-GCGGC--------------CG--CCGUUG- -5'
17030 5' -64.2 NC_004333.2 + 40656 0.67 0.211667
Target:  5'- cCAguaCGGUCUGGCCGCC-GCcGCGAa -3'
miRNA:   3'- -GUag-GCCGGACCGGCGGcCGcCGUUg -5'
17030 5' -64.2 NC_004333.2 + 31093 0.67 0.211667
Target:  5'- gGUUCGgcGCCUGGcCCGUCaGCGGCGc- -3'
miRNA:   3'- gUAGGC--CGGACC-GGCGGcCGCCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.