miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17031 3' -66.3 NC_004333.2 + 19936 0.66 0.227069
Target:  5'- aGCGCCGCGCGcGCGucacggucacgugacGCGCcCGGaCG-Cg -3'
miRNA:   3'- -UGCGGCGCGCuCGC---------------CGCGcGCC-GCaG- -5'
17031 3' -66.3 NC_004333.2 + 10200 0.66 0.224838
Target:  5'- cGCGCaCGCGCauGCGGC-CGuCGGCaUCa -3'
miRNA:   3'- -UGCG-GCGCGcuCGCCGcGC-GCCGcAG- -5'
17031 3' -66.3 NC_004333.2 + 42011 0.66 0.224838
Target:  5'- uCGgUGCGCGuGaaGCGCGCGGCc-- -3'
miRNA:   3'- uGCgGCGCGCuCgcCGCGCGCCGcag -5'
17031 3' -66.3 NC_004333.2 + 44002 0.66 0.224838
Target:  5'- cACGCCGCuGC-AGCacgaGCGCGGCG-Cg -3'
miRNA:   3'- -UGCGGCG-CGcUCGccg-CGCGCCGCaG- -5'
17031 3' -66.3 NC_004333.2 + 26292 0.66 0.224284
Target:  5'- gGCGCCcaauuggggcuauGCGC-AGCGaaccagcuuguaGCGCGCGccGCGUCg -3'
miRNA:   3'- -UGCGG-------------CGCGcUCGC------------CGCGCGC--CGCAG- -5'
17031 3' -66.3 NC_004333.2 + 18418 0.66 0.224284
Target:  5'- aACGCCuCGCGAucgGCGGCGUcgacaccGCGaGCG-Cg -3'
miRNA:   3'- -UGCGGcGCGCU---CGCCGCG-------CGC-CGCaG- -5'
17031 3' -66.3 NC_004333.2 + 33043 0.66 0.219343
Target:  5'- aGCGCCGCacguGCGuAGCGGUcggccacgaGCGCuGGCa-- -3'
miRNA:   3'- -UGCGGCG----CGC-UCGCCG---------CGCG-CCGcag -5'
17031 3' -66.3 NC_004333.2 + 18334 0.66 0.219343
Target:  5'- uCGCUGCGaacgaucaguCGAcUGGCgGCGCGGCGaUCa -3'
miRNA:   3'- uGCGGCGC----------GCUcGCCG-CGCGCCGC-AG- -5'
17031 3' -66.3 NC_004333.2 + 46347 0.66 0.219343
Target:  5'- gGCGCCGUuauGCGccgcuGCGGauuugGCGCGGCcuaggacaGUCg -3'
miRNA:   3'- -UGCGGCG---CGCu----CGCCg----CGCGCCG--------CAG- -5'
17031 3' -66.3 NC_004333.2 + 18536 0.66 0.219343
Target:  5'- -aGCCG-GCGGcaacccggguGCGGCagccgGCGCGGCGg- -3'
miRNA:   3'- ugCGGCgCGCU----------CGCCG-----CGCGCCGCag -5'
17031 3' -66.3 NC_004333.2 + 29836 0.66 0.2188
Target:  5'- cGCGCCGCcaguCGAcugaucguucgcaGCGaagcGCGCGCGGUaGUCg -3'
miRNA:   3'- -UGCGGCGc---GCU-------------CGC----CGCGCGCCG-CAG- -5'
17031 3' -66.3 NC_004333.2 + 10497 0.66 0.213963
Target:  5'- cGCGCCGgGCcggccgacGAGCGGguCGgGCGcGCGcUCg -3'
miRNA:   3'- -UGCGGCgCG--------CUCGCC--GCgCGC-CGC-AG- -5'
17031 3' -66.3 NC_004333.2 + 19912 0.66 0.213432
Target:  5'- cGCGCCGUccgcaucaucgacGaCGAGCGcGcCGgGCGGCGa- -3'
miRNA:   3'- -UGCGGCG-------------C-GCUCGC-C-GCgCGCCGCag -5'
17031 3' -66.3 NC_004333.2 + 6688 0.66 0.208697
Target:  5'- cCGCCGCuucaCGuGCGGgGCGCauuGGCGa- -3'
miRNA:   3'- uGCGGCGc---GCuCGCCgCGCG---CCGCag -5'
17031 3' -66.3 NC_004333.2 + 28995 0.66 0.208697
Target:  5'- cCGCCGgGUcGGCGugcgcaucGCGCGCGGCu-- -3'
miRNA:   3'- uGCGGCgCGcUCGC--------CGCGCGCCGcag -5'
17031 3' -66.3 NC_004333.2 + 40318 0.66 0.208697
Target:  5'- gGCGa-GCGCGAGCuggaaauggccGGCGCagGCcGCGUCg -3'
miRNA:   3'- -UGCggCGCGCUCG-----------CCGCG--CGcCGCAG- -5'
17031 3' -66.3 NC_004333.2 + 3158 0.66 0.208697
Target:  5'- aGCGCCacGCGCggucGAGCGGCcggacaGCGCGcCGUg -3'
miRNA:   3'- -UGCGG--CGCG----CUCGCCG------CGCGCcGCAg -5'
17031 3' -66.3 NC_004333.2 + 8916 0.66 0.208177
Target:  5'- gGCGUCgauGCGCGAcGCGGCuucguucGCGCcGGCGc- -3'
miRNA:   3'- -UGCGG---CGCGCU-CGCCG-------CGCG-CCGCag -5'
17031 3' -66.3 NC_004333.2 + 18792 0.66 0.206622
Target:  5'- uACGCCGUuugcuucGCGGGCGacgagccgcuugaaGUGCGCGuGCGa- -3'
miRNA:   3'- -UGCGGCG-------CGCUCGC--------------CGCGCGC-CGCag -5'
17031 3' -66.3 NC_004333.2 + 43282 0.66 0.203543
Target:  5'- gGCGCacuaucgcagCGCGCGcuacauggucAGCGGCGgcaGCGGCaUCg -3'
miRNA:   3'- -UGCG----------GCGCGC----------UCGCCGCg--CGCCGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.