miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17031 3' -66.3 NC_004333.2 + 34414 1.07 0.000118
Target:  5'- cACGCCGCGCGAGCGGCGCGCGGCGUCc -3'
miRNA:   3'- -UGCGGCGCGCUCGCCGCGCGCCGCAG- -5'
17031 3' -66.3 NC_004333.2 + 27656 0.83 0.009977
Target:  5'- -gGCCGCcaGCGAGCGGCGCGgCGGCGg- -3'
miRNA:   3'- ugCGGCG--CGCUCGCCGCGC-GCCGCag -5'
17031 3' -66.3 NC_004333.2 + 11703 0.82 0.011801
Target:  5'- gACGCaGCGcCGGGCGGCGUGCuGGCGUCc -3'
miRNA:   3'- -UGCGgCGC-GCUCGCCGCGCG-CCGCAG- -5'
17031 3' -66.3 NC_004333.2 + 13879 0.79 0.020054
Target:  5'- cGCGCCGCGCGaAGuCGGCcggcacgggcuGCGCGGCGg- -3'
miRNA:   3'- -UGCGGCGCGC-UC-GCCG-----------CGCGCCGCag -5'
17031 3' -66.3 NC_004333.2 + 8983 0.78 0.024364
Target:  5'- -gGCCGUGCGcGGCGGCGaccgaCGCGGCGUUc -3'
miRNA:   3'- ugCGGCGCGC-UCGCCGC-----GCGCCGCAG- -5'
17031 3' -66.3 NC_004333.2 + 29892 0.77 0.027991
Target:  5'- aGCGCUGCGCGAucggGCcGCGCGCGGCaUCc -3'
miRNA:   3'- -UGCGGCGCGCU----CGcCGCGCGCCGcAG- -5'
17031 3' -66.3 NC_004333.2 + 13761 0.77 0.03215
Target:  5'- gACGCCGCGCGccGCu-CGCGCGGCGUg -3'
miRNA:   3'- -UGCGGCGCGCu-CGccGCGCGCCGCAg -5'
17031 3' -66.3 NC_004333.2 + 19406 0.76 0.033052
Target:  5'- cGCGCCGcCGCGAcccgcGCGGuCGaCGCGGCGcUCg -3'
miRNA:   3'- -UGCGGC-GCGCU-----CGCC-GC-GCGCCGC-AG- -5'
17031 3' -66.3 NC_004333.2 + 3290 0.76 0.037947
Target:  5'- uACGCCcuuucuccuuguGCGCGcGGCGGCGCGCGGUu-- -3'
miRNA:   3'- -UGCGG------------CGCGC-UCGCCGCGCGCCGcag -5'
17031 3' -66.3 NC_004333.2 + 17856 0.76 0.039008
Target:  5'- -gGCCGCGCGuaUGGCGgGUGGUGUCg -3'
miRNA:   3'- ugCGGCGCGCucGCCGCgCGCCGCAG- -5'
17031 3' -66.3 NC_004333.2 + 41576 0.76 0.039008
Target:  5'- cUGCgGCGCuGGGCGGCGCGCcguGGCGg- -3'
miRNA:   3'- uGCGgCGCG-CUCGCCGCGCG---CCGCag -5'
17031 3' -66.3 NC_004333.2 + 37301 0.75 0.046012
Target:  5'- cUGUCGCGCcGGCGuucuuccCGCGCGGCGUCa -3'
miRNA:   3'- uGCGGCGCGcUCGCc------GCGCGCCGCAG- -5'
17031 3' -66.3 NC_004333.2 + 37405 0.74 0.055741
Target:  5'- uACGUCgGCGCucGCGGUuuGCGCGGCGUg -3'
miRNA:   3'- -UGCGG-CGCGcuCGCCG--CGCGCCGCAg -5'
17031 3' -66.3 NC_004333.2 + 756 0.73 0.057128
Target:  5'- gGCGCCG-GCGAGCGGCGauguagcUGCGauugcuugcGCGUCg -3'
miRNA:   3'- -UGCGGCgCGCUCGCCGC-------GCGC---------CGCAG- -5'
17031 3' -66.3 NC_004333.2 + 998 0.73 0.057285
Target:  5'- cUGCUGCGCG-GCaGCGCGUucuuccGGCGUCa -3'
miRNA:   3'- uGCGGCGCGCuCGcCGCGCG------CCGCAG- -5'
17031 3' -66.3 NC_004333.2 + 32532 0.73 0.05887
Target:  5'- uUGCCGaCGuCGcGCGGCGCGCucGCGUCg -3'
miRNA:   3'- uGCGGC-GC-GCuCGCCGCGCGc-CGCAG- -5'
17031 3' -66.3 NC_004333.2 + 9281 0.73 0.061662
Target:  5'- gUGCCgaucaGCGCGaAGCGGCGCgggugcgcggacggGCGGCGUUc -3'
miRNA:   3'- uGCGG-----CGCGC-UCGCCGCG--------------CGCCGCAG- -5'
17031 3' -66.3 NC_004333.2 + 44382 0.73 0.063884
Target:  5'- uGCGCUGCuCG-GCGGCGCGUGcGCGg- -3'
miRNA:   3'- -UGCGGCGcGCuCGCCGCGCGC-CGCag -5'
17031 3' -66.3 NC_004333.2 + 13366 0.73 0.067453
Target:  5'- gGCGCgGCaCGAGCGGCGUGUccaugaucuGGuCGUCg -3'
miRNA:   3'- -UGCGgCGcGCUCGCCGCGCG---------CC-GCAG- -5'
17031 3' -66.3 NC_004333.2 + 17495 0.72 0.069309
Target:  5'- cCGCCGCcgGCG-GCGGCGCGaaCGGCuUCa -3'
miRNA:   3'- uGCGGCG--CGCuCGCCGCGC--GCCGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.