miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17031 5' -52.6 NC_004333.2 + 1865 0.66 0.827458
Target:  5'- gUCGAuCUUCGACGaGuCGCGAGUAaccGGCg -3'
miRNA:   3'- -AGCU-GAAGUUGC-C-GUGCUCGUac-CUG- -5'
17031 5' -52.6 NC_004333.2 + 23003 0.66 0.827458
Target:  5'- uUCGAgacgCGGCGGCagGCGAGCGUGucGAUc -3'
miRNA:   3'- -AGCUgaa-GUUGCCG--UGCUCGUAC--CUG- -5'
17031 5' -52.6 NC_004333.2 + 24845 0.66 0.827458
Target:  5'- cUCGACcgUCGGCGGCcgcACGAaccGCAcGGGg -3'
miRNA:   3'- -AGCUGa-AGUUGCCG---UGCU---CGUaCCUg -5'
17031 5' -52.6 NC_004333.2 + 33449 0.66 0.826521
Target:  5'- cCGGCagcauuggCAGCGGCGCGccgGGCgauccagaguugaGUGGGCg -3'
miRNA:   3'- aGCUGaa------GUUGCCGUGC---UCG-------------UACCUG- -5'
17031 5' -52.6 NC_004333.2 + 44683 0.66 0.817998
Target:  5'- -aGACgUCGaaGCGGCACaGGCgAUGGAg -3'
miRNA:   3'- agCUGaAGU--UGCCGUGcUCG-UACCUg -5'
17031 5' -52.6 NC_004333.2 + 18297 0.66 0.808331
Target:  5'- gCGAaguuCUUCGcCGGCACGcGCGUGcGCa -3'
miRNA:   3'- aGCU----GAAGUuGCCGUGCuCGUACcUG- -5'
17031 5' -52.6 NC_004333.2 + 44383 0.66 0.808331
Target:  5'- gCG-CUgcUCGGCGGCGCGuGCGcGGuACa -3'
miRNA:   3'- aGCuGA--AGUUGCCGUGCuCGUaCC-UG- -5'
17031 5' -52.6 NC_004333.2 + 41413 0.66 0.808331
Target:  5'- aUCGGCUaccUCGAgGcGCGCGA-CcgGGGCg -3'
miRNA:   3'- -AGCUGA---AGUUgC-CGUGCUcGuaCCUG- -5'
17031 5' -52.6 NC_004333.2 + 32267 0.66 0.798468
Target:  5'- cCGAaagcCUUCcgGAUGGCGCGGGUcgGcGGCg -3'
miRNA:   3'- aGCU----GAAG--UUGCCGUGCUCGuaC-CUG- -5'
17031 5' -52.6 NC_004333.2 + 41759 0.66 0.798468
Target:  5'- gCGAUUUgCcguACGGCACGAccgcaugcGCGUGGGa -3'
miRNA:   3'- aGCUGAA-Gu--UGCCGUGCU--------CGUACCUg -5'
17031 5' -52.6 NC_004333.2 + 20936 0.66 0.78842
Target:  5'- cCGACgccCGGCGGCuacgccACGGGCc-GGACg -3'
miRNA:   3'- aGCUGaa-GUUGCCG------UGCUCGuaCCUG- -5'
17031 5' -52.6 NC_004333.2 + 34305 0.66 0.78842
Target:  5'- cCGACUUCGcGCGGCGCGGcGCGc---- -3'
miRNA:   3'- aGCUGAAGU-UGCCGUGCU-CGUaccug -5'
17031 5' -52.6 NC_004333.2 + 47989 0.66 0.78842
Target:  5'- cCGGCg--GGC-GCACGGGCAgUGGACu -3'
miRNA:   3'- aGCUGaagUUGcCGUGCUCGU-ACCUG- -5'
17031 5' -52.6 NC_004333.2 + 30170 0.66 0.786389
Target:  5'- cCGGCUUCGuCGGCuuGAGUuuguugaucugGGGCg -3'
miRNA:   3'- aGCUGAAGUuGCCGugCUCGua---------CCUG- -5'
17031 5' -52.6 NC_004333.2 + 38646 0.67 0.767817
Target:  5'- aUCGGCccgGGCGGCACGGGCAa---- -3'
miRNA:   3'- -AGCUGaagUUGCCGUGCUCGUaccug -5'
17031 5' -52.6 NC_004333.2 + 5581 0.67 0.767817
Target:  5'- cUCGAUUgu-GCGGCcauCGGGCAUGcGCa -3'
miRNA:   3'- -AGCUGAaguUGCCGu--GCUCGUACcUG- -5'
17031 5' -52.6 NC_004333.2 + 13962 0.67 0.757286
Target:  5'- gCGACUUCAgGCGGCggccggugcgcGCGAGC-UGcGCg -3'
miRNA:   3'- aGCUGAAGU-UGCCG-----------UGCUCGuACcUG- -5'
17031 5' -52.6 NC_004333.2 + 27627 0.67 0.74662
Target:  5'- cCGACgaUCAGCGGCGCGGcCAUGuuACa -3'
miRNA:   3'- aGCUGa-AGUUGCCGUGCUcGUACc-UG- -5'
17031 5' -52.6 NC_004333.2 + 43779 0.67 0.73583
Target:  5'- -gGGCUUCAAC--CACGGGCugaucUGGACg -3'
miRNA:   3'- agCUGAAGUUGccGUGCUCGu----ACCUG- -5'
17031 5' -52.6 NC_004333.2 + 5333 0.67 0.73583
Target:  5'- cUGGCagauGCGGCGCGGGCuucuucGGACa -3'
miRNA:   3'- aGCUGaaguUGCCGUGCUCGua----CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.