miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17032 3' -58 NC_004333.2 + 5945 0.66 0.536344
Target:  5'- cCAUUUGUugUCGGCCGucgugcggucgaaguCGAGCcGCa -3'
miRNA:   3'- -GUGGACGugAGCCGGCu--------------GUUCGaCGc -5'
17032 3' -58 NC_004333.2 + 5199 0.66 0.53528
Target:  5'- gCGCCgccCGCUCGuccGCCGGCGAgGgUGCGg -3'
miRNA:   3'- -GUGGac-GUGAGC---CGGCUGUU-CgACGC- -5'
17032 3' -58 NC_004333.2 + 42230 0.66 0.53528
Target:  5'- gACC-GCACgaCGGCCGACAacaaauGGUaUGCGu -3'
miRNA:   3'- gUGGaCGUGa-GCCGGCUGU------UCG-ACGC- -5'
17032 3' -58 NC_004333.2 + 31084 0.66 0.532092
Target:  5'- gCGCCUGCAggUUCGGCgccuggcccgucagCGGCGcgAGUUGCu -3'
miRNA:   3'- -GUGGACGU--GAGCCG--------------GCUGU--UCGACGc -5'
17032 3' -58 NC_004333.2 + 30889 0.66 0.524681
Target:  5'- gACgCUGCGC-CGGCCGGCGuucacgucgaaGGCaaucUGCa -3'
miRNA:   3'- gUG-GACGUGaGCCGGCUGU-----------UCG----ACGc -5'
17032 3' -58 NC_004333.2 + 25706 0.66 0.514163
Target:  5'- aCGCCcGCgagaauggcuuGCUC-GCCGGCcAGCUGCa -3'
miRNA:   3'- -GUGGaCG-----------UGAGcCGGCUGuUCGACGc -5'
17032 3' -58 NC_004333.2 + 44957 0.66 0.503731
Target:  5'- -uCCUGCGCgcgcacgucggCGGCCGACu-GCaGCa -3'
miRNA:   3'- guGGACGUGa----------GCCGGCUGuuCGaCGc -5'
17032 3' -58 NC_004333.2 + 32854 0.66 0.503731
Target:  5'- gGCCUGCucgAgUCGGUCGAU--GUUGCGc -3'
miRNA:   3'- gUGGACG---UgAGCCGGCUGuuCGACGC- -5'
17032 3' -58 NC_004333.2 + 29625 0.66 0.50062
Target:  5'- uCGCCgccGCGC-CGGCUGccGCAcccggguugccgccGGCUGCGa -3'
miRNA:   3'- -GUGGa--CGUGaGCCGGC--UGU--------------UCGACGC- -5'
17032 3' -58 NC_004333.2 + 35805 0.66 0.493393
Target:  5'- -cCCUGCAagUCGGCaaaaaACAacGGCUGCGg -3'
miRNA:   3'- guGGACGUg-AGCCGgc---UGU--UCGACGC- -5'
17032 3' -58 NC_004333.2 + 41518 0.66 0.493393
Target:  5'- gCGCCUGCuCgagCGcGCCGAgCGcGCUGCc -3'
miRNA:   3'- -GUGGACGuGa--GC-CGGCU-GUuCGACGc -5'
17032 3' -58 NC_004333.2 + 43650 0.66 0.483153
Target:  5'- gGCCUGCACcaccaggaUCGcaacaaGCuCGACGGGUUGUGg -3'
miRNA:   3'- gUGGACGUG--------AGC------CG-GCUGUUCGACGC- -5'
17032 3' -58 NC_004333.2 + 17492 0.66 0.483153
Target:  5'- gCugCUcGCACUCGaccgcaCCGACcuGCUGCa -3'
miRNA:   3'- -GugGA-CGUGAGCc-----GGCUGuuCGACGc -5'
17032 3' -58 NC_004333.2 + 4775 0.66 0.483153
Target:  5'- uGCCUGCGCgggCGGCUG-CGGGaccauaGCGa -3'
miRNA:   3'- gUGGACGUGa--GCCGGCuGUUCga----CGC- -5'
17032 3' -58 NC_004333.2 + 3211 0.66 0.482134
Target:  5'- --gCUGCAgUCGGCCGccgacgugcgcgcGCAggauAGCUGCc -3'
miRNA:   3'- gugGACGUgAGCCGGC-------------UGU----UCGACGc -5'
17032 3' -58 NC_004333.2 + 43297 0.67 0.473016
Target:  5'- gGCCggcuaUGCGCUCGuGCCGAuCGAGCcGaCGc -3'
miRNA:   3'- gUGG-----ACGUGAGC-CGGCU-GUUCGaC-GC- -5'
17032 3' -58 NC_004333.2 + 277 0.67 0.473016
Target:  5'- cCGCCgaGCACggucaCGGUCGACGu-CUGCGg -3'
miRNA:   3'- -GUGGa-CGUGa----GCCGGCUGUucGACGC- -5'
17032 3' -58 NC_004333.2 + 32977 0.67 0.473016
Target:  5'- gGCCUGCuGC-CGGCCGuGCGGaUUGCGa -3'
miRNA:   3'- gUGGACG-UGaGCCGGC-UGUUcGACGC- -5'
17032 3' -58 NC_004333.2 + 48072 0.67 0.469996
Target:  5'- aACCUcgacacgacaacggGCAC-CGGCgGGCAGGCacucUGCGa -3'
miRNA:   3'- gUGGA--------------CGUGaGCCGgCUGUUCG----ACGC- -5'
17032 3' -58 NC_004333.2 + 27847 0.67 0.462988
Target:  5'- gUACCcGUcgGCaCGGCCGGCAAGCcugGCa -3'
miRNA:   3'- -GUGGaCG--UGaGCCGGCUGUUCGa--CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.