miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17032 5' -49.9 NC_004333.2 + 45350 0.66 0.941056
Target:  5'- aGCCGCAuucACGUCGcCGGAUUUcgUGGUc- -3'
miRNA:   3'- -CGGCGU---UGUAGUcGCUUAAG--ACCAcc -5'
17032 5' -49.9 NC_004333.2 + 19548 0.66 0.935694
Target:  5'- gGgCGCu-CAUCAGCGAg--CUGGUa- -3'
miRNA:   3'- -CgGCGuuGUAGUCGCUuaaGACCAcc -5'
17032 5' -49.9 NC_004333.2 + 27730 0.66 0.930032
Target:  5'- -gCGCGAUcgCGGCGcGAaUCUGGUcGGc -3'
miRNA:   3'- cgGCGUUGuaGUCGC-UUaAGACCA-CC- -5'
17032 5' -49.9 NC_004333.2 + 44102 0.66 0.930032
Target:  5'- gGCgGCGacuucGCAUCGuuucGCGGcggCUGGUGGu -3'
miRNA:   3'- -CGgCGU-----UGUAGU----CGCUuaaGACCACC- -5'
17032 5' -49.9 NC_004333.2 + 1435 0.66 0.924069
Target:  5'- cGCCGaguGCGUCGGUcAGUUC-GGUGa -3'
miRNA:   3'- -CGGCgu-UGUAGUCGcUUAAGaCCACc -5'
17032 5' -49.9 NC_004333.2 + 31241 0.66 0.917805
Target:  5'- gGCCGCGcgGCG-CAGCGccgUCUcGGUGu -3'
miRNA:   3'- -CGGCGU--UGUaGUCGCuuaAGA-CCACc -5'
17032 5' -49.9 NC_004333.2 + 17079 0.67 0.889774
Target:  5'- cGCCGgAACAUCGGCGAAccg-GGc-- -3'
miRNA:   3'- -CGGCgUUGUAGUCGCUUaagaCCacc -5'
17032 5' -49.9 NC_004333.2 + 26072 0.68 0.865741
Target:  5'- cGCCGCAGCggCGGCGcuuccgGAUUCgGGcaGGc -3'
miRNA:   3'- -CGGCGUUGuaGUCGC------UUAAGaCCa-CC- -5'
17032 5' -49.9 NC_004333.2 + 30234 0.68 0.839327
Target:  5'- uUCGUAGC--CGGCGAGUUUgucgaUGGUGGa -3'
miRNA:   3'- cGGCGUUGuaGUCGCUUAAG-----ACCACC- -5'
17032 5' -49.9 NC_004333.2 + 1455 0.68 0.839327
Target:  5'- uGCUGCAGCuUCGuGCG-AUUCUGGa-- -3'
miRNA:   3'- -CGGCGUUGuAGU-CGCuUAAGACCacc -5'
17032 5' -49.9 NC_004333.2 + 3690 0.69 0.820516
Target:  5'- aGCCGUcGCGUCGuagcuGCGGAUcgUCUGGUu- -3'
miRNA:   3'- -CGGCGuUGUAGU-----CGCUUA--AGACCAcc -5'
17032 5' -49.9 NC_004333.2 + 31032 0.69 0.790711
Target:  5'- uGCUGCAGCAUguGCGGcacGUcCUGcUGGa -3'
miRNA:   3'- -CGGCGUUGUAguCGCU---UAaGACcACC- -5'
17032 5' -49.9 NC_004333.2 + 47992 0.71 0.726586
Target:  5'- gGCUGUgcuACAUCGGCGcGUUCUGGc-- -3'
miRNA:   3'- -CGGCGu--UGUAGUCGCuUAAGACCacc -5'
17032 5' -49.9 NC_004333.2 + 44812 0.73 0.589936
Target:  5'- cGCCGCGACGcUCGGCGAGgacaUGGa-- -3'
miRNA:   3'- -CGGCGUUGU-AGUCGCUUaag-ACCacc -5'
17032 5' -49.9 NC_004333.2 + 33529 1.14 0.001571
Target:  5'- cGCCGCAACAUCAGCGAAUUCUGGUGGu -3'
miRNA:   3'- -CGGCGUUGUAGUCGCUUAAGACCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.