miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17033 5' -53.2 NC_004333.2 + 3580 0.66 0.792477
Target:  5'- gCAGCGGUACGGUGUUuucccacaCGCCGA--CCa -3'
miRNA:   3'- -GUUGCCGUGCUGCAA--------GCGGCUuuGGc -5'
17033 5' -53.2 NC_004333.2 + 16938 0.66 0.792477
Target:  5'- aGACGGCgcugcgccgcGCGGcCGUcgCGCCGGcauGACCa -3'
miRNA:   3'- gUUGCCG----------UGCU-GCAa-GCGGCU---UUGGc -5'
17033 5' -53.2 NC_004333.2 + 18558 0.66 0.792477
Target:  5'- gCAGcCGGCGCGGCGgcgaauCCGAAcCCGu -3'
miRNA:   3'- -GUU-GCCGUGCUGCaagc--GGCUUuGGC- -5'
17033 5' -53.2 NC_004333.2 + 9845 0.66 0.792477
Target:  5'- uCGGuCGGCACGcccucgagGCGcauUUCGCCGGucGCCGc -3'
miRNA:   3'- -GUU-GCCGUGC--------UGC---AAGCGGCUu-UGGC- -5'
17033 5' -53.2 NC_004333.2 + 25430 0.67 0.782521
Target:  5'- aCGACGucGC-CGugGUUCGUCGAc-CCGa -3'
miRNA:   3'- -GUUGC--CGuGCugCAAGCGGCUuuGGC- -5'
17033 5' -53.2 NC_004333.2 + 47486 0.67 0.782521
Target:  5'- gCGGCGGCACGAUcg-CGCUc--ACCGa -3'
miRNA:   3'- -GUUGCCGUGCUGcaaGCGGcuuUGGC- -5'
17033 5' -53.2 NC_004333.2 + 40410 0.67 0.782521
Target:  5'- gAACGGCuCGuacuUGUUCGgCGugGCCGg -3'
miRNA:   3'- gUUGCCGuGCu---GCAAGCgGCuuUGGC- -5'
17033 5' -53.2 NC_004333.2 + 37516 0.67 0.779503
Target:  5'- cCGGcCGGCGCGAcCGUgacgucaccuuucuUCGCCGccACCu -3'
miRNA:   3'- -GUU-GCCGUGCU-GCA--------------AGCGGCuuUGGc -5'
17033 5' -53.2 NC_004333.2 + 32500 0.67 0.779503
Target:  5'- cCAGCGGCGaaauuucguugaccCGgaaGCGUUUGCCGAcgUCGc -3'
miRNA:   3'- -GUUGCCGU--------------GC---UGCAAGCGGCUuuGGC- -5'
17033 5' -53.2 NC_004333.2 + 43271 0.67 0.772405
Target:  5'- aCGGgGGCGCaAgGggCGCCGAucccGGCCGg -3'
miRNA:   3'- -GUUgCCGUGcUgCaaGCGGCU----UUGGC- -5'
17033 5' -53.2 NC_004333.2 + 31236 0.67 0.762141
Target:  5'- gCGACGGCcgcGCGGCGcagCGCCGuc-UCGg -3'
miRNA:   3'- -GUUGCCG---UGCUGCaa-GCGGCuuuGGC- -5'
17033 5' -53.2 NC_004333.2 + 41715 0.67 0.762141
Target:  5'- gGGCGGCACGGCGcgaucaaCGagGAGAUCGg -3'
miRNA:   3'- gUUGCCGUGCUGCaa-----GCggCUUUGGC- -5'
17033 5' -53.2 NC_004333.2 + 42703 0.67 0.751742
Target:  5'- cCGACGaGCggGCGGCGUUCGaucuGACCGa -3'
miRNA:   3'- -GUUGC-CG--UGCUGCAAGCggcuUUGGC- -5'
17033 5' -53.2 NC_004333.2 + 10259 0.67 0.751742
Target:  5'- aCGACgcaGGCAguuUGGCG-UCGCCGAGAgCGc -3'
miRNA:   3'- -GUUG---CCGU---GCUGCaAGCGGCUUUgGC- -5'
17033 5' -53.2 NC_004333.2 + 18356 0.67 0.751742
Target:  5'- uGGCGGCGCGGCGaUCagcaucaacgGCCcgguGACCGu -3'
miRNA:   3'- gUUGCCGUGCUGCaAG----------CGGcu--UUGGC- -5'
17033 5' -53.2 NC_004333.2 + 8841 0.67 0.751742
Target:  5'- -uGCGGUGCGuCGUagaagcgCGCCGccGCCGa -3'
miRNA:   3'- guUGCCGUGCuGCAa------GCGGCuuUGGC- -5'
17033 5' -53.2 NC_004333.2 + 34084 0.67 0.751742
Target:  5'- uCGACGGCAUGACGaucgCGCUGcaucAGCUu -3'
miRNA:   3'- -GUUGCCGUGCUGCaa--GCGGCu---UUGGc -5'
17033 5' -53.2 NC_004333.2 + 16951 0.67 0.751742
Target:  5'- -uACGGCuuuaugguuGCGACGUcgguacaGCCGAgaAACCGa -3'
miRNA:   3'- guUGCCG---------UGCUGCAag-----CGGCU--UUGGC- -5'
17033 5' -53.2 NC_004333.2 + 33355 0.67 0.741217
Target:  5'- gAACGGCGCGcCG-UCGUgGAAcGCCu -3'
miRNA:   3'- gUUGCCGUGCuGCaAGCGgCUU-UGGc -5'
17033 5' -53.2 NC_004333.2 + 34605 0.67 0.741217
Target:  5'- uCGGCGGCACGAaagaGaaaGCCGAcacauccggccuGGCCGc -3'
miRNA:   3'- -GUUGCCGUGCUg---CaagCGGCU------------UUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.