miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17034 3' -54.6 NC_004333.2 + 44985 0.66 0.72874
Target:  5'- gGCCGGcUCAccGGCCUCguGCUCa-CGCAGg -3'
miRNA:   3'- -UGGCU-AGUu-UCGGAG--CGAGcaGCGUC- -5'
17034 3' -54.6 NC_004333.2 + 38162 0.66 0.72874
Target:  5'- cGCCGAUCuuGGCa-CGC-CGcUCGCAa -3'
miRNA:   3'- -UGGCUAGuuUCGgaGCGaGC-AGCGUc -5'
17034 3' -54.6 NC_004333.2 + 18903 0.66 0.72874
Target:  5'- gACgCGAUCAAAGCg--GCUCGggccgCGUAGg -3'
miRNA:   3'- -UG-GCUAGUUUCGgagCGAGCa----GCGUC- -5'
17034 3' -54.6 NC_004333.2 + 6347 0.66 0.72874
Target:  5'- gACCGcUCGcGGCCgggCGC-CGUCGUg- -3'
miRNA:   3'- -UGGCuAGUuUCGGa--GCGaGCAGCGuc -5'
17034 3' -54.6 NC_004333.2 + 3091 0.66 0.717932
Target:  5'- -gCGAUCuucGCCUCGUUCGacagCGCGc -3'
miRNA:   3'- ugGCUAGuuuCGGAGCGAGCa---GCGUc -5'
17034 3' -54.6 NC_004333.2 + 2851 0.66 0.707036
Target:  5'- uUCGAUCAGcguugcGGCgUUCGCgaacgaCGUCGCAGc -3'
miRNA:   3'- uGGCUAGUU------UCG-GAGCGa-----GCAGCGUC- -5'
17034 3' -54.6 NC_004333.2 + 32300 0.66 0.696064
Target:  5'- -gCGGUCAcGGCggCUCGCUCGcgggcUCGCAc -3'
miRNA:   3'- ugGCUAGUuUCG--GAGCGAGC-----AGCGUc -5'
17034 3' -54.6 NC_004333.2 + 6875 0.66 0.696064
Target:  5'- cGCCGggCGAgcucGGCCUCGUcgaaGUCGCc- -3'
miRNA:   3'- -UGGCuaGUU----UCGGAGCGag--CAGCGuc -5'
17034 3' -54.6 NC_004333.2 + 3682 0.66 0.685029
Target:  5'- -aCGGUCuGAGCCgUCGCgUCGUagcUGCGGa -3'
miRNA:   3'- ugGCUAGuUUCGG-AGCG-AGCA---GCGUC- -5'
17034 3' -54.6 NC_004333.2 + 20446 0.66 0.685029
Target:  5'- gGCgGcgCGAAGCCUgCGCcggUCGUgaCGCAGc -3'
miRNA:   3'- -UGgCuaGUUUCGGA-GCG---AGCA--GCGUC- -5'
17034 3' -54.6 NC_004333.2 + 14169 0.66 0.685029
Target:  5'- gACCGGccCGAuGCCgggUCGCUCGUCGgGa -3'
miRNA:   3'- -UGGCUa-GUUuCGG---AGCGAGCAGCgUc -5'
17034 3' -54.6 NC_004333.2 + 5467 0.67 0.673941
Target:  5'- gUCGGUCAGAucgaacgccGCC-CGCUCGUCGg-- -3'
miRNA:   3'- uGGCUAGUUU---------CGGaGCGAGCAGCguc -5'
17034 3' -54.6 NC_004333.2 + 2498 0.67 0.673941
Target:  5'- aGCUGAUCGcgcGCC-CGCUCGguaggugcaugCGCAGc -3'
miRNA:   3'- -UGGCUAGUuu-CGGaGCGAGCa----------GCGUC- -5'
17034 3' -54.6 NC_004333.2 + 18169 0.67 0.662813
Target:  5'- aGCCGAUUgccggcguGCCgggugaugCGCUCGUCGUg- -3'
miRNA:   3'- -UGGCUAGuuu-----CGGa-------GCGAGCAGCGuc -5'
17034 3' -54.6 NC_004333.2 + 45340 0.67 0.662813
Target:  5'- cGCUGAUCGAAGCCgcauucacgUCGCcggauuucgUgGUCGCGu -3'
miRNA:   3'- -UGGCUAGUUUCGG---------AGCG---------AgCAGCGUc -5'
17034 3' -54.6 NC_004333.2 + 8460 0.67 0.662813
Target:  5'- uGCCGAgcuu-GCCgaggUCGCUUGUCGuCAGu -3'
miRNA:   3'- -UGGCUaguuuCGG----AGCGAGCAGC-GUC- -5'
17034 3' -54.6 NC_004333.2 + 42303 0.67 0.651654
Target:  5'- uGCCGAcCGAGGCguaUCGCgugcUGUUGCAGc -3'
miRNA:   3'- -UGGCUaGUUUCGg--AGCGa---GCAGCGUC- -5'
17034 3' -54.6 NC_004333.2 + 15330 0.67 0.651654
Target:  5'- gACCGAcUCGAgcaGGCCgCGCUCauGUUGCAc -3'
miRNA:   3'- -UGGCU-AGUU---UCGGaGCGAG--CAGCGUc -5'
17034 3' -54.6 NC_004333.2 + 41230 0.67 0.651654
Target:  5'- cGCCGGUCGugucGCCgUCGCUgCGcuuccCGCAGa -3'
miRNA:   3'- -UGGCUAGUuu--CGG-AGCGA-GCa----GCGUC- -5'
17034 3' -54.6 NC_004333.2 + 686 0.67 0.651654
Target:  5'- cGCCGGcCGgcGCCUCGUUCaG-CGCGGc -3'
miRNA:   3'- -UGGCUaGUuuCGGAGCGAG-CaGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.