miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17034 5' -54 NC_004333.2 + 1526 0.66 0.747283
Target:  5'- gGCCUGcagcgugaucGUCAGCGGcaccucguugaacacGAAgCcGGCCGACa -3'
miRNA:   3'- -UGGAC----------UAGUUGCU---------------CUUgGaCCGGCUG- -5'
17034 5' -54 NC_004333.2 + 40758 0.66 0.732265
Target:  5'- -gCUGAUCGagcgcaucGCGcaGACCUGGCCG-Ca -3'
miRNA:   3'- ugGACUAGU--------UGCucUUGGACCGGCuG- -5'
17034 5' -54 NC_004333.2 + 27733 0.66 0.732265
Target:  5'- ---cGAUCGcgGCGcGAAUCUGGUCGGCc -3'
miRNA:   3'- uggaCUAGU--UGCuCUUGGACCGGCUG- -5'
17034 5' -54 NC_004333.2 + 16900 0.66 0.72032
Target:  5'- uGCCUGAUCuggugccCGGGcGCCcgcguguuaaucgUGGUCGACu -3'
miRNA:   3'- -UGGACUAGuu-----GCUCuUGG-------------ACCGGCUG- -5'
17034 5' -54 NC_004333.2 + 40453 0.67 0.699434
Target:  5'- gGCCUGAUCAACGAuccgucGCUguccGcGCCGAUc -3'
miRNA:   3'- -UGGACUAGUUGCUcu----UGGa---C-CGGCUG- -5'
17034 5' -54 NC_004333.2 + 14998 0.67 0.699434
Target:  5'- aGCC-GGUUAGCGGGccGCCgacGCCGACg -3'
miRNA:   3'- -UGGaCUAGUUGCUCu-UGGac-CGGCUG- -5'
17034 5' -54 NC_004333.2 + 12658 0.67 0.688337
Target:  5'- uGCCauuUGAUCGACGGGucGACC-GcGCCGAa -3'
miRNA:   3'- -UGG---ACUAGUUGCUC--UUGGaC-CGGCUg -5'
17034 5' -54 NC_004333.2 + 25286 0.67 0.654754
Target:  5'- aGCgUGuUCGGCGucgcAACCgGGCCGACg -3'
miRNA:   3'- -UGgACuAGUUGCuc--UUGGaCCGGCUG- -5'
17034 5' -54 NC_004333.2 + 16860 0.68 0.632237
Target:  5'- gGCCaaggcGAUCGACGGGcGACUguucggcacGGCCGACu -3'
miRNA:   3'- -UGGa----CUAGUUGCUC-UUGGa--------CCGGCUG- -5'
17034 5' -54 NC_004333.2 + 46287 0.68 0.632237
Target:  5'- uCCUGAUCGGCGAccccGCCaauccgGGCCaGGCg -3'
miRNA:   3'- uGGACUAGUUGCUcu--UGGa-----CCGG-CUG- -5'
17034 5' -54 NC_004333.2 + 10665 0.68 0.620973
Target:  5'- -aCUGAUCuucACGuG-GCCgUGGCCGGCg -3'
miRNA:   3'- ugGACUAGu--UGCuCuUGG-ACCGGCUG- -5'
17034 5' -54 NC_004333.2 + 31283 0.69 0.576117
Target:  5'- cACCaUGc-CGGCGAGAccggccgcACCUGcGCCGACg -3'
miRNA:   3'- -UGG-ACuaGUUGCUCU--------UGGAC-CGGCUG- -5'
17034 5' -54 NC_004333.2 + 17720 0.69 0.565001
Target:  5'- gGCCU--UCGACaGGGA-CUGGCCGACu -3'
miRNA:   3'- -UGGAcuAGUUGcUCUUgGACCGGCUG- -5'
17034 5' -54 NC_004333.2 + 45478 0.69 0.553942
Target:  5'- cACCUGccgcccgagcagGUCAGCGAGAucgucuacaaCUGGCgGGCg -3'
miRNA:   3'- -UGGAC------------UAGUUGCUCUug--------GACCGgCUG- -5'
17034 5' -54 NC_004333.2 + 27228 0.69 0.542948
Target:  5'- cGCCgucgUGAUCGcaGCGucuGCCUGcGCCGACg -3'
miRNA:   3'- -UGG----ACUAGU--UGCucuUGGAC-CGGCUG- -5'
17034 5' -54 NC_004333.2 + 5497 0.69 0.539664
Target:  5'- gACCUGaAUCGcaucccaauccuucGCGGGGauauaggucauGCCgUGGCCGGCg -3'
miRNA:   3'- -UGGAC-UAGU--------------UGCUCU-----------UGG-ACCGGCUG- -5'
17034 5' -54 NC_004333.2 + 42894 0.7 0.489211
Target:  5'- cACCUGAcCGACGAacaaaucagaaGAGCCgagaGGCCGuACg -3'
miRNA:   3'- -UGGACUaGUUGCU-----------CUUGGa---CCGGC-UG- -5'
17034 5' -54 NC_004333.2 + 17279 0.71 0.448077
Target:  5'- uGCCU--UCGACGuGAACgCcGGCCGGCg -3'
miRNA:   3'- -UGGAcuAGUUGCuCUUG-GaCCGGCUG- -5'
17034 5' -54 NC_004333.2 + 21446 0.71 0.448077
Target:  5'- cGCCgacgCAAUGGGucaaguuCCUGGCCGGCg -3'
miRNA:   3'- -UGGacuaGUUGCUCuu-----GGACCGGCUG- -5'
17034 5' -54 NC_004333.2 + 30149 0.71 0.448077
Target:  5'- ---cGAUCAGCGcguAGAACUcGGCCGGCu -3'
miRNA:   3'- uggaCUAGUUGC---UCUUGGaCCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.