miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17035 3' -59.2 NC_004333.2 + 3795 0.66 0.497312
Target:  5'- cGCgcaCGCGCCGC-CGa-GCAGCGCa -3'
miRNA:   3'- -CGaagGCGUGGCGcGCcaCGUCGUGg -5'
17035 3' -59.2 NC_004333.2 + 41490 0.66 0.497312
Target:  5'- uGCgccCCGCACgugaaGCgGCGGaUGC-GCGCCu -3'
miRNA:   3'- -CGaa-GGCGUGg----CG-CGCC-ACGuCGUGG- -5'
17035 3' -59.2 NC_004333.2 + 2498 0.66 0.497312
Target:  5'- aGCUgaUCgCGCGCC-CGCucgguaGGUGCAuGCGCa -3'
miRNA:   3'- -CGA--AG-GCGUGGcGCG------CCACGU-CGUGg -5'
17035 3' -59.2 NC_004333.2 + 11275 0.66 0.497312
Target:  5'- gGCcgagUUCGCguuGCCGCGCGcUGUugaacuGCGCCg -3'
miRNA:   3'- -CGa---AGGCG---UGGCGCGCcACGu-----CGUGG- -5'
17035 3' -59.2 NC_004333.2 + 6590 0.66 0.497312
Target:  5'- cGCaucgCCGcCACgGCGCGccGCccAGCGCCg -3'
miRNA:   3'- -CGaa--GGC-GUGgCGCGCcaCG--UCGUGG- -5'
17035 3' -59.2 NC_004333.2 + 9181 0.66 0.497312
Target:  5'- uGCguucgUUCGCgACgGCagugucgaucGCGGUGC-GCACCg -3'
miRNA:   3'- -CGa----AGGCG-UGgCG----------CGCCACGuCGUGG- -5'
17035 3' -59.2 NC_004333.2 + 19494 0.66 0.487204
Target:  5'- --aUCgGCGCUgGCGCGcugGCGGCGCUc -3'
miRNA:   3'- cgaAGgCGUGG-CGCGCca-CGUCGUGG- -5'
17035 3' -59.2 NC_004333.2 + 8971 0.66 0.487204
Target:  5'- gGCUggaUCGUggGCCGUGCGcG-GCGGCgACCg -3'
miRNA:   3'- -CGAa--GGCG--UGGCGCGC-CaCGUCG-UGG- -5'
17035 3' -59.2 NC_004333.2 + 6742 0.66 0.487204
Target:  5'- ---cUCGC-CCGCGUcGaGCAGCGCCu -3'
miRNA:   3'- cgaaGGCGuGGCGCGcCaCGUCGUGG- -5'
17035 3' -59.2 NC_004333.2 + 30128 0.66 0.487204
Target:  5'- ---aCUGCGCaGCaGCGG-GCAGCGCg -3'
miRNA:   3'- cgaaGGCGUGgCG-CGCCaCGUCGUGg -5'
17035 3' -59.2 NC_004333.2 + 10548 0.66 0.487204
Target:  5'- --aUCCgGCGggaugUCGCGCGuGacaucaUGCAGCACCg -3'
miRNA:   3'- cgaAGG-CGU-----GGCGCGC-C------ACGUCGUGG- -5'
17035 3' -59.2 NC_004333.2 + 22219 0.66 0.477194
Target:  5'- cUUUCCaGCGCCGCGUacuGGccGCcGGCAUCg -3'
miRNA:   3'- cGAAGG-CGUGGCGCG---CCa-CG-UCGUGG- -5'
17035 3' -59.2 NC_004333.2 + 7801 0.66 0.477194
Target:  5'- --gUUCGagucgGCCGCGCGGcGUGuGCACCg -3'
miRNA:   3'- cgaAGGCg----UGGCGCGCCaCGU-CGUGG- -5'
17035 3' -59.2 NC_004333.2 + 1938 0.66 0.477194
Target:  5'- aGCUggcCCGCACCGgcgaCGCGG-GC--CGCCu -3'
miRNA:   3'- -CGAa--GGCGUGGC----GCGCCaCGucGUGG- -5'
17035 3' -59.2 NC_004333.2 + 8284 0.66 0.471237
Target:  5'- aGUUUCUccuugauguagguagGCGgCGCGCGGgGCucGCGCCc -3'
miRNA:   3'- -CGAAGG---------------CGUgGCGCGCCaCGu-CGUGG- -5'
17035 3' -59.2 NC_004333.2 + 15191 0.66 0.467286
Target:  5'- cGCgUUCGCAauCCGCaCGGccgGCAGCagGCCg -3'
miRNA:   3'- -CGaAGGCGU--GGCGcGCCa--CGUCG--UGG- -5'
17035 3' -59.2 NC_004333.2 + 18269 0.66 0.467286
Target:  5'- aGCggCCGaggauGCCGCGCGcGgcccgaucgcGCAGCGCUu -3'
miRNA:   3'- -CGaaGGCg----UGGCGCGC-Ca---------CGUCGUGG- -5'
17035 3' -59.2 NC_004333.2 + 25932 0.66 0.457486
Target:  5'- aGCUauUgCGCGCgGCGCGaUGcCGGCgGCCa -3'
miRNA:   3'- -CGA--AgGCGUGgCGCGCcAC-GUCG-UGG- -5'
17035 3' -59.2 NC_004333.2 + 10961 0.66 0.457486
Target:  5'- uGCgggCCacaGCGUCGCGCGGaacuCGGCACCg -3'
miRNA:   3'- -CGaa-GG---CGUGGCGCGCCac--GUCGUGG- -5'
17035 3' -59.2 NC_004333.2 + 29571 0.66 0.457486
Target:  5'- gGUUgCCGC-CCGCGCc-UGCcGCGCCg -3'
miRNA:   3'- -CGAaGGCGuGGCGCGccACGuCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.